RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MMAAQ8IVH4 418 aaKnown RBP13.78□□□□□ -0.2
LINC00540-202ENST00000616974 CAMKK1Q8N5S9 505 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 PQLC3Q8N755 202 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 KCNV2Q8TDN2 545 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 SMOC1Q9H4F8 434 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 CELSR3Q9NYQ7 3312 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 GRID2IPA4D2P6 1211 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 MFSD11O43934 449 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 MAPKAPK2P49137 400 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 PAPOLAP51003 745 aaKnown RBP13.78□□□□□ -0.2
LINC00540-202ENST00000616974 SLC10A2Q12908 348 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-202ENST00000616974 TCEAL1Q15170 157 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 ATXN7L2Q5T6C5 722 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-202ENST00000616974 SDE2Q6IQ49 451 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 ARMCX6Q7L4S7 300 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 WDR5BQ86VZ2 330 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 ZNF354CQ86Y25 554 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 UMODL1-AS1Q8N2C9 162 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 RNF25Q96BH1 459 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-202ENST00000616974 POLMQ9NP87 494 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-202ENST00000616974 HS3ST2Q9Y278 367 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 WASH4PA8MWX3 477 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 DFFAO00273 331 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 DAPK3O43293 454 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 TIMM44O43615 452 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 SYNCRIPO60506 623 aaKnown RBP13.77□□□□□ -0.21
LINC00540-202ENST00000616974 HOXA6P31267 233 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 ARHGAP25P42331 645 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 PTGER3P43115 390 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 RGRP47804 291 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 RPS14P62263 151 aaKnown RBP13.77□□□□□ -0.21
LINC00540-202ENST00000616974 MTA1Q13330 715 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 SLC12A1Q13621 1099 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 KRT81Q14533 505 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 AFMIDQ63HM1 303 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 NCBP2-AS2Q69YL0 99 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 NPNTQ6UXI9 565 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 TRMT11Q7Z4G4 463 aaKnown RBP13.77□□□□□ -0.21
LINC00540-202ENST00000616974 TMEFF1Q8IYR6 380 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 LRRC57Q8N9N7 239 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 OR2A12Q8NGT7 310 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 FAM71BQ8TC56 605 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 TEKT4Q8WW24 435 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 C2orf49Q9BVC5 232 aaPredicted RBP13.77□□□□□ -0.21
LINC00540-202ENST00000616974 PRDM16Q9HAZ2 1276 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 SAE1Q9UBE0 346 aaPredicted RBP13.77□□□□□ -0.21
LINC00540-202ENST00000616974 PCDHGA2Q9Y5H1 932 aa13.77□□□□□ -0.21
LINC00540-202ENST00000616974 LRRD1A4D1F6 860 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 MUSKO15146 869 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 MID1O15344 667 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 PJA2O43164 708 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ATP9BO43861 1147 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 RPP40O75818 363 aaKnown RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 SRPRAP08240 638 aaKnown RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 KRT10P13645 584 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 KDELR1P24390 212 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ACSL1P33121 698 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 MAN1A1P33908 653 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 P2RY2P41231 377 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 SERPINH1P50454 418 aaKnown RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 TPMTP51580 245 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 GBE1Q04446 702 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 SERINC3Q13530 473 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 STARD3Q14849 445 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 HSF5Q4G112 596 aaPredicted RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 C22orf39Q6P5X5 142 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 MFSD7Q6UXD7 560 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 DPY19L3Q6ZPD9 716 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 DAAM2Q86T65 1068 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 KIAA1328Q86T90 577 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 AADATQ8N5Z0 425 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 KCTD6Q8NC69 237 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 GRIN3AQ8TCU5 1115 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 PDFQ9HBH1 243 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 TDRD6O60522 2096 aaKnown RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ATXN2Q99700 1313 aaKnown RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 IGHV1OR15-9A0A0B4J2B8 117 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 SPOPO43791 374 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ASLP04424 464 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 DESP17661 470 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ETFBP38117 255 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 PSMD8P48556 350 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 DNA2P51530 1060 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 HADHBP55084 474 aaKnown RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 GSDMDP57764 484 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ST8SIA6P61647 398 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ANKRD20A8PQ5CZ79 823 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 OR2T3Q8NH03 318 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 ALG3Q92685 438 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 SIPA1Q96FS4 1042 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 PRRX2Q99811 253 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 DUSP15Q9H1R2 295 aaPredicted RBP13.76□□□□□ -0.21
LINC00540-202ENST00000616974 MAGEH1Q9H213 219 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 CATSPERBQ9H7T0 1116 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 SLC25A13Q9UJS0 675 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 TMEM131Q92545 1883 aa13.76□□□□□ -0.21
LINC00540-202ENST00000616974 INSIG1O15503 277 aa13.75□□□□□ -0.21
LINC00540-202ENST00000616974 FGF10O15520 208 aaPredicted RBP13.75□□□□□ -0.21
LINC00540-202ENST00000616974 TMCC1O94876 653 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms