RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 STAU1O95793 577 aaKnown RBP14.21□□□□□ -0.14
CPSF1-212ENST00000616140 CST3P01034 146 aaPredicted RBP14.21□□□□□ -0.14
CPSF1-212ENST00000616140 ARF4P18085 180 aaPredicted RBP14.21□□□□□ -0.14
CPSF1-212ENST00000616140 HSDL1Q3SXM5 330 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 ERAP2Q6P179 960 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 GPSM1Q86YR5 675 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 EID3Q8N140 333 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 FBXW8Q8N3Y1 598 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 PTGR2Q8N8N7 351 aaPredicted RBP14.21□□□□□ -0.14
CPSF1-212ENST00000616140 SPOCK2Q92563 424 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 KLHL25Q9H0H3 589 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 PRDM16Q9HAZ2 1276 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 PCDH18Q9HCL0 1135 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 MIEF1Q9NQG6 463 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 AAASQ9NRG9 546 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 XPR1Q9UBH6 696 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 LNPEPQ9UIQ6 1025 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 DYRK1BQ9Y463 629 aa14.21□□□□□ -0.14
CPSF1-212ENST00000616140 SHPRHQ149N8 1683 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ZMYM2Q9UBW7 1377 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 HS6ST1O60243 411 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 SH3BGRLO75368 114 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ABCB1P08183 1280 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 TM4SF1P30408 202 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 CD86P42081 329 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 EPHB3P54753 998 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 IL2P60568 153 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 USP4Q13107 963 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 IL27RAQ6UWB1 636 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ITFG1Q8TB96 612 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 MTERF3Q96E29 417 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ASB2Q96Q27 587 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 PHACTR1Q9C0D0 580 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 PADI4Q9UM07 663 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 NRCAMQ92823 1304 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 A0A087WXM4 84 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 RGSL1A5PLK6 1076 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 KRT87PA6NCN2 255 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ATG7O95352 703 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 MATKP42679 507 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 NEK3P51956 506 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 SLC20A2Q08357 652 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 CXCL17Q6UXB2 119 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 NET1Q7Z628 596 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ZCCHC7Q8N3Z6 543 aaKnown RBP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ZNF614Q8N883 585 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 STAG3L4Q8TBR4 150 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 P2RY11Q96G91 374 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 TINF2Q9BSI4 451 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 PDGFDQ9GZP0 370 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 VPS45Q9NRW7 570 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ZNF839A8K0R7 811 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 A8MX80 341 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 PRR5-ARHGAP8B1AHC4 643 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 PRR23D1E9PI22 279 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ZNF862O60290 1169 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 LRCH4O75427 683 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 PRR23D2P0DMB1 279 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 ARHGAP8P85298 464 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 MAD2L1Q13257 205 aaPredicted RBP14.2□□□□□ -0.14
CPSF1-212ENST00000616140 SLC1A5Q15758 541 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 CLNKQ7Z7G1 428 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 BSNDQ8WZ55 320 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 SNX15Q9NRS6 342 aa14.2□□□□□ -0.14
CPSF1-212ENST00000616140 PIRTP0C851 137 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 CYP2C18P33260 490 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 PLPPR4Q7Z2D5 763 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 APTXQ7Z2E3 356 aaKnown RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 DEFB128Q7Z7B8 93 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 HERC6Q8IVU3 1022 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 GPC2Q8N158 579 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 SPATA6LQ8N4H0 392 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 LENG9Q96B70 501 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 TMEM159Q96B96 161 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 NMUR2Q9GZQ4 415 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 C6orf203Q9P0P8 240 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 BTBD7Q9P203 1132 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 RABGEF1Q9UJ41 708 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 DOLKQ9UPQ8 538 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 RIPK3Q9Y572 518 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 A0A087X1B8 175 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 TBKBP1A7MCY6 615 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 KRT75O95678 551 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 IFNA14P01570 189 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 PSME3P61289 254 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 FASTKD3Q14CZ7 662 aaKnown RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 PACS1Q6VY07 963 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 DHDDSQ86SQ9 333 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 ULK2Q8IYT8 1036 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 ARRDC4Q8NCT1 418 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 MED8Q96G25 268 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 OSGEPL1Q9H4B0 414 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 TRPC4Q9UBN4 977 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 ADAM28Q9UKQ2 775 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 TRPV2Q9Y5S1 764 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 CLDN5O00501 218 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 SCAMP3O14828 347 aaKnown RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 FGF10O15520 208 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 PAPSS1O43252 624 aaPredicted RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms