RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 A0A0A0MRY4 1105 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 FAM149AA5PLN7 773 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 TIPRLO75663 272 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 HNRNPLP14866 589 aaKnown RBP eCLIP18.66■□□□□ 0.58
UPF1-210ENST00000600689 UGT1A6P19224 532 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 GLDCP23378 1020 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 NAA20P61599 178 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 PITX1P78337 314 aaPredicted RBP18.66■□□□□ 0.58
UPF1-210ENST00000600689 PDAP1Q13442 181 aaKnown RBP18.66■□□□□ 0.58
UPF1-210ENST00000600689 GLRA4Q5JXX5 417 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 NCBP2-AS2Q69YL0 99 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 ZNF786Q8N393 782 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 PNPLA1Q8N8W4 532 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 FAM47BQ8NA70 645 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 KCTD4Q8WVF5 259 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 SPATA13Q96N96 652 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 GPR20Q99678 358 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 BCO2Q9BYV7 579 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 FAM96AQ9H5X1 160 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 PDGFCQ9NRA1 345 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 ADARB2Q9NS39 739 aaKnown RBP18.66■□□□□ 0.58
UPF1-210ENST00000600689 RBPJLQ9UBG7 517 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 EFNA5P52803 228 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 PLOD1Q02809 727 aaPredicted RBP18.66■□□□□ 0.58
UPF1-210ENST00000600689 FAM160B1Q5W0V3 765 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 OLFML1Q6UWY5 402 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 ILDR2Q71H61 639 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 RNF135Q8IUD6 432 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 ACE2Q9BYF1 805 aaPredicted RBP18.66■□□□□ 0.58
UPF1-210ENST00000600689 CXCL16Q9H2A7 254 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 CYP4F12Q9HCS2 524 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 CCDC167Q9P0B6 97 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 RNF181Q9P0P0 153 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 HESX1Q9UBX0 185 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 CROCCQ5TZA2 2017 aa18.66■□□□□ 0.58
UPF1-210ENST00000600689 KPNA7A9QM74 516 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 HDAC3O15379 428 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 CCDC166P0CW27 439 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 RPL14P50914 215 aaKnown RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 GJC2Q5T442 439 aaPredicted RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 DDI1Q8WTU0 396 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 GBA2Q9HCG7 927 aaPredicted RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 AP4S1Q9Y587 144 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 C9JVG2 144 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 SPRP35270 261 aaPredicted RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 PPARGP37231 505 aaPredicted RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 SLC6A3Q01959 620 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 SOWAHAQ2M3V2 549 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 POTEHQ6S545 545 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 SREK1Q8WXA9 508 aaKnown RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 MRPL45Q9BRJ2 306 aaKnown RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 ZNF670Q9BS34 389 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 NT5C1AQ9BXI3 368 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 EFCAB1Q9HAE3 211 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 CHRAC1Q9NRG0 131 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 RUVBL2Q9Y230 463 aaKnown RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 CDYLQ9Y232 598 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 SIP14410 1827 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 NEMP2A6NFY4 417 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 ZNF839A8K0R7 811 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 E7ENX8 843 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 GABBR2O75899 941 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 ACAT1P24752 427 aaKnown RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 ARL4AP40617 200 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 RABGGTBP53611 331 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 NME3Q13232 169 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 APOFQ13790 326 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 SURF1Q15526 300 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 LRRC8EQ6NSJ5 796 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 KDELC2Q7Z4H8 507 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 ZNF554Q86TJ5 538 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 OR6B3Q8NGW1 331 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 KHSRPQ92945 711 aaKnown RBP eCLIP18.65■□□□□ 0.58
UPF1-210ENST00000600689 QKIQ96PU8 341 aaKnown RBP eCLIP18.65■□□□□ 0.58
UPF1-210ENST00000600689 PRDM12Q9H4Q4 367 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 PRPF19Q9UMS4 504 aaKnown RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 CDC14AQ9UNH5 594 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 AURKCQ9UQB9 309 aa18.65■□□□□ 0.58
UPF1-210ENST00000600689 COPG1Q9Y678 874 aaKnown RBP18.65■□□□□ 0.58
UPF1-210ENST00000600689 A0A0G2JMZ2 1700 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 PPEF2O14830 753 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 XPOTO43592 962 aaKnown RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 TSPAN8P19075 237 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 IREB2P48200 963 aaKnown RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 PLK1P53350 603 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 CBX3Q13185 183 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 TMEM102Q8N9M5 508 aaPredicted RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 GIPC3Q8TF64 312 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 SPATA33Q96N06 139 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 TBCBQ99426 244 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 PAIP1Q9H074 479 aaKnown RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 TLK1Q9UKI8 766 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 MATN2O00339 956 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 AKAP10O43572 662 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 B4GALT4O60513 344 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 GNAO1P09471 354 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 CCDC130P13994 396 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 ALOX15P16050 662 aaPredicted RBP18.64■□□□□ 0.57
UPF1-210ENST00000600689 MAGEA6P43360 314 aa18.64■□□□□ 0.57
UPF1-210ENST00000600689 SLC5A3P53794 718 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms