RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 METTL12A8MUP2 240 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 K7ERQ8 282 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 SMAD6O43541 496 aaKnown RBP16.49■□□□□ 0.23
TRIM28-213ENST00000598355 RAMP2O60895 175 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 RNASEH1O60930 286 aaKnown RBP16.49■□□□□ 0.23
TRIM28-213ENST00000598355 NDUFS2O75306 463 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 C5AR1P21730 350 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 IL1R2P27930 398 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 ADKP55263 362 aaKnown RBP16.49■□□□□ 0.23
TRIM28-213ENST00000598355 YBEYP58557 167 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-213ENST00000598355 SLC25A11Q02978 314 aaKnown RBP16.49■□□□□ 0.23
TRIM28-213ENST00000598355 DPYSL2Q16555 572 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 TCEAL6Q6IPX3 200 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 RETSATQ6NUM9 610 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 SLC23A3Q6PIS1 610 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 LINGO4Q6UY18 593 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 MMAAQ8IVH4 418 aaKnown RBP16.49■□□□□ 0.23
TRIM28-213ENST00000598355 AADATQ8N5Z0 425 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 TC2NQ8N9U0 490 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 KNL1Q8NG31 2342 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 OR2A12Q8NGT7 310 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 NETO1Q8TDF5 533 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 OR8D1Q8WZ84 308 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 PIGKQ92643 395 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 TCEAL3Q969E4 200 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 MRFAP1L1Q96HT8 127 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 KCTD15Q96SI1 283 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-213ENST00000598355 TRIM5Q9C035 493 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 CATSPERBQ9H7T0 1116 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 SGK2Q9HBY8 427 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 CAPN10Q9HC96 672 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 RXFP3Q9NSD7 469 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 DNAI1Q9UI46 699 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 ANAPC7Q9UJX3 599 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 PPM1HQ9ULR3 514 aa16.49■□□□□ 0.23
TRIM28-213ENST00000598355 ATXN2Q99700 1313 aaKnown RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 TMEM131Q92545 1883 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 PATE3B3GLJ2 98 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 AKR1B15C9JRZ8 316 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 CBX4O00257 560 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 CREB3O43889 395 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 PRPSAP2O60256 369 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 GDF9O60383 454 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 TCF4P15884 667 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 SLC8A1P32418 973 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 PSMD8P48556 350 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 TPI1P60174 286 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 DAB2IPQ5VWQ8 1189 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 RABEPKQ7Z6M1 372 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 DSG4Q86SJ6 1040 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 PLPP6Q8IY26 295 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 PCDH20Q8N6Y1 951 aaKnown RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 C12orf50Q8NA57 414 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 ATP11CQ8NB49 1132 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 C1orf216Q8TAB5 229 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 ZNF564Q8TBZ8 553 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 TEKT4Q8WW24 435 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 VOPP1Q96AW1 172 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 ISG20Q96AZ6 181 aaKnown RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 PACSIN1Q9BY11 444 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 KLC2Q9H0B6 622 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 BTBD1Q9H0C5 482 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 DHX35Q9H5Z1 703 aaKnown RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 LRRC19Q9H756 370 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 ZNHIT6Q9NWK9 470 aaKnown RBP16.48■□□□□ 0.23
TRIM28-213ENST00000598355 FBXL12Q9NXK8 326 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 UVRAGQ9P2Y5 699 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 PCSK1NQ9UHG2 260 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 IP6K2Q9UHH9 426 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 SARDHQ9UL12 918 aa16.48■□□□□ 0.23
TRIM28-213ENST00000598355 SHROOM3Q8TF72 1996 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 A0A1W2PP55 124 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 ZSCAN5CA6NGD5 496 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-213ENST00000598355 SLC30A4O14863 429 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 SEMA4FO95754 770 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 CTSLP07711 333 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 TMEM253P0C7T8 217 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 FECHP22830 423 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 HCAR3P49019 387 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 ZNF75DP51815 510 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 METAP1P53582 386 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 GEMIN4P57678 1058 aaKnown RBP16.47■□□□□ 0.23
TRIM28-213ENST00000598355 SFSWAPQ12872 951 aaKnown RBP16.47■□□□□ 0.23
TRIM28-213ENST00000598355 DPYSQ14117 519 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 POLD3Q15054 466 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-213ENST00000598355 PARP15Q460N3 678 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 AFMIDQ63HM1 303 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 DEFB119Q8N690 84 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 CEP76Q8TAP6 659 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 FAM71BQ8TC56 605 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 BTBD6Q96KE9 485 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 ORAI3Q9BRQ5 295 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 SPON2Q9BUD6 331 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 C6orf106Q9H6K1 298 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-213ENST00000598355 NHEJ1Q9H9Q4 299 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-213ENST00000598355 DONSONQ9NYP3 566 aa16.47■□□□□ 0.23
TRIM28-213ENST00000598355 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-213ENST00000598355 EEF2KO00418 725 aaKnown RBP16.46■□□□□ 0.23
TRIM28-213ENST00000598355 SLC7A4O43246 635 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 KDELR3O43731 214 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms