RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CCDC110Q8TBZ0 833 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 POF1BQ8WVV4 589 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 MAML1Q92585 1016 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 ALKBH8Q96BT7 664 aaKnown RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 CDCA3Q99618 268 aaPredicted RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 KLF16Q9BXK1 252 aaPredicted RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 CCSER2Q9H7U1 834 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 VPS37BQ9H9H4 285 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 SP110Q9HB58 689 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 ANLNQ9NQW6 1124 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 SAMD15Q9P1V8 674 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 LGALS13Q9UHV8 139 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 IPO11Q9UI26 975 aaKnown RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 VANGL2Q9ULK5 521 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 TSC2P49815 1807 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 LTBP2Q14767 1821 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 IQANK1A0A1B0GTG1 560 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 EXOC1LA0A1B0GW35 172 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 E2F8A0AVK6 867 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 LINC01553A4QN01 128 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 I6L893 689 aaPredicted RBP8.13□□□□□ -1.11
VPS39-213ENST00000570062 DFFAO00273 331 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 STC2O76061 302 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 METTL18O95568 372 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 ACSL3O95573 720 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 TBX18O95935 607 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 JCHAINP01591 159 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 CYBBP04839 570 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 POLBP06746 335 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 LINC00271P0C7V0 271 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 VAV1P15498 845 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 GABRR2P28476 465 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 WEE1P30291 646 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 CORO1AP31146 461 aaKnown RBP8.13□□□□□ -1.11
VPS39-213ENST00000570062 CTHP32929 405 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 MAGEA3P43357 314 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 SERPINB9P50453 376 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 PAPOLAP51003 745 aaKnown RBP8.13□□□□□ -1.11
VPS39-213ENST00000570062 SLC18A1P54219 525 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 EPHA5P54756 1037 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 ERVK-21P61565 698 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 CBX1P83916 185 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 DNAJC3Q13217 504 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 MPP3Q13368 585 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 SLC12A1Q13621 1099 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 RALGPS1Q5JS13 557 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 RAP1GAP2Q684P5 730 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 MRPL14Q6P1L8 145 aaKnown RBP8.13□□□□□ -1.11
VPS39-213ENST00000570062 KDM7AQ6ZMT4 941 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 HTR3DQ70Z44 454 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 ARHGAP12Q8IWW6 846 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 CPXM2Q8N436 756 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 TEX26Q8N6G2 289 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 FBXO36Q8NEA4 188 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 TTC17Q96AE7 1141 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 OTUB2Q96DC9 234 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 MTBPQ96DY7 904 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 EBNA1BP2Q99848 306 aaKnown RBP8.13□□□□□ -1.11
VPS39-213ENST00000570062 SLC39A8Q9C0K1 460 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 IL22Q9GZX6 179 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 SLC25A51Q9H1U9 297 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 EPB41L4BQ9H329 900 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 CENPHQ9H3R5 247 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 ACSS3Q9H6R3 686 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 GLOD4Q9HC38 313 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 LRRC4CQ9HCJ2 640 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 NSMCE4AQ9NXX6 385 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 CXXC1Q9P0U4 656 aaPredicted RBP8.13□□□□□ -1.11
VPS39-213ENST00000570062 SEPT10Q9P0V9 454 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 BCCIPQ9P287 314 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS39-213ENST00000570062 TBC1D14Q9P2M4 693 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 ZC3H7BQ9UGR2 993 aaKnown RBP8.13□□□□□ -1.11
VPS39-213ENST00000570062 MSRAQ9UJ68 235 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 ADAM21Q9UKJ8 722 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 NUDT5Q9UKK9 219 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 TBC1D30Q9Y2I9 924 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 SH3BP1Q9Y3L3 701 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 TEX264Q9Y6I9 313 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 MICAL3Q7RTP6 2002 aa8.13□□□□□ -1.11
VPS39-213ENST00000570062 CENPFP49454 3210 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 DNAH12Q6ZR08 3092 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 TLDC2A0PJX2 215 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 RASA4BC9J798 803 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 H3BNC9 293 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 H3BQF6 201 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 SLC9A3R1O14745 358 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 POLR3GO15318 223 aaPredicted RBP8.12□□□□□ -1.11
VPS39-213ENST00000570062 RASA4O43374 803 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 KDELR3O43731 214 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 TMEM63AO94886 807 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 ADH1CP00326 375 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 EPOP01588 193 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 HMBSP08397 361 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 TCF3P15923 654 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 PGAM1P18669 254 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 NR1D1P20393 614 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 CA4P22748 312 aa8.12□□□□□ -1.11
VPS39-213ENST00000570062 LORP23490 312 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms