RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 L1CAMP32004 1257 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 ETFBP38117 255 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 METAP1P53582 386 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 ADPRHP54922 357 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 AIF1P55008 147 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 KLHL30Q0D2K2 578 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 NUMA1Q14980 2115 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 PLEKHA7Q6IQ23 1121 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 RETSATQ6NUM9 610 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 RWDD4Q6NW29 188 aaKnown RBP20.76■□□□□ 0.91
CLK3-225ENST00000569063 PIP4P1Q86T03 277 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 OR2A12Q8NGT7 310 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D31Q96DN5 1066 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 CCDC114Q96M63 670 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 SPON2Q9BUD6 331 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 ACE2Q9BYF1 805 aaPredicted RBP20.76■□□□□ 0.91
CLK3-225ENST00000569063 ATP13A1Q9HD20 1204 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 TM9SF3Q9HD45 589 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 TMEM248Q9NWD8 314 aa20.76■□□□□ 0.91
CLK3-225ENST00000569063 FARP1Q9Y4F1 1045 aaPredicted RBP20.76■□□□□ 0.91
CLK3-225ENST00000569063 A0A1W2PPC4 97 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 DDX3XO00571 662 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLK3-225ENST00000569063 GIPC1O14908 333 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 SLC7A4O43246 635 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 SMAD6O43541 496 aaKnown RBP20.75■□□□□ 0.91
CLK3-225ENST00000569063 FTLP02792 175 aaPredicted RBP20.75■□□□□ 0.91
CLK3-225ENST00000569063 DESP17661 470 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 GRIA4P48058 902 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 CSNK1EP49674 416 aaKnown RBP20.75■□□□□ 0.91
CLK3-225ENST00000569063 CCR5P51681 352 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 BNC1Q01954 994 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 OGDHQ02218 1023 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 SCYL2Q6P3W7 929 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 IL27RAQ6UWB1 636 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.75■□□□□ 0.91
CLK3-225ENST00000569063 OR14C36Q8NHC7 312 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 PIP4K2CQ8TBX8 421 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 KDM4CQ9H3R0 1056 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 SLC32A1Q9H598 525 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 NDFIP2Q9NV92 336 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 TPX2Q9ULW0 747 aaKnown RBP20.75■□□□□ 0.91
CLK3-225ENST00000569063 FZD10Q9ULW2 581 aa20.75■□□□□ 0.91
CLK3-225ENST00000569063 A0A1B0GVT2 93 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 ZNF821O75541 412 aaPredicted RBP20.74■□□□□ 0.91
CLK3-225ENST00000569063 SKILP12757 684 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 CD59P13987 128 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 SERPINH1P50454 418 aaKnown RBP20.74■□□□□ 0.91
CLK3-225ENST00000569063 ARF5P84085 180 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 TEAD4Q15561 434 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 EFHC2Q5JST6 749 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 TMC6Q7Z403 805 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 PYROXD2Q8N2H3 581 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 DEFB124Q8NES8 71 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 TMIEQ8NEW7 156 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 SYN2Q92777 582 aaPredicted RBP20.74■□□□□ 0.91
CLK3-225ENST00000569063 CEP44Q9C0F1 390 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 MAGEH1Q9H213 219 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 DNAI1Q9UI46 699 aa20.74■□□□□ 0.91
CLK3-225ENST00000569063 PLRG1O43660 514 aaKnown RBP20.73■□□□□ 0.91
CLK3-225ENST00000569063 BNIP3LO60238 219 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 RTN2O75298 545 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 CER1O95813 267 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 CTSLP07711 333 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 ZNF883P0CG24 379 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 CHRNA3P32297 505 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 ACVRL1P37023 503 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 RACK1P63244 317 aaKnown RBP20.73■□□□□ 0.91
CLK3-225ENST00000569063 CNTN1Q12860 1018 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 HLA-BQ31612 363 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 C22orf39Q6P5X5 142 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 ARHGEF2Q92974 986 aaKnown RBP20.73■□□□□ 0.91
CLK3-225ENST00000569063 IQCDQ96DY2 449 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 GAREM1Q9H706 876 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 EBF2Q9HAK2 575 aa20.73■□□□□ 0.91
CLK3-225ENST00000569063 BZW2Q9Y6E2 419 aaKnown RBP20.73■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3DA0A087WVF3 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3IA0A087WXS9 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3EA0A087X179 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3KA0A087X1G2 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3FA6NER0 549 aaPredicted RBP20.72■□□□□ 0.91
CLK3-225ENST00000569063 TMEM191CA6NGB0 347 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3LB9A6J9 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 PLK4O00444 970 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 ATMINO43313 823 aaPredicted RBP20.72■□□□□ 0.91
CLK3-225ENST00000569063 CD160O95971 181 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3HP0C7X1 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 PMLP29590 882 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 AGBL4Q5VU57 503 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 HGSNATQ68CP4 663 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3GQ6DHY5 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3CQ6IPX1 549 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 DNAAF5Q86Y56 855 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TBC1D3Q8IZP1 549 aaPredicted RBP20.72■□□□□ 0.91
CLK3-225ENST00000569063 PCDH20Q8N6Y1 951 aaKnown RBP20.72■□□□□ 0.91
CLK3-225ENST00000569063 FNIP1Q8TF40 1166 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 ISCUQ9H1K1 167 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 TNKS2Q9H2K2 1166 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 CAPN11Q9UMQ6 739 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 ANKRD6Q9Y2G4 727 aa20.72■□□□□ 0.91
CLK3-225ENST00000569063 CACNA1EQ15878 2313 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms