RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZNF839A8K0R7 811 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 CASQ2O14958 399 aaPredicted RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 LIMK2P53671 638 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 MPP1Q00013 466 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 VGLL4Q14135 290 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 IL23RQ5VWK5 629 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 EPGNQ6UW88 154 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 TRIM67Q6ZTA4 783 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 LPCAT2Q7L5N7 544 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 PSTKQ8IV42 348 aaKnown RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 OR6P1Q8NGX9 317 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 SLC35F5Q8WV83 523 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 LRTOMTQ8WZ04 291 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 NXNL1Q96CM4 212 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 KLRG1Q96E93 195 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 FSD1LQ9BXM9 530 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 EIF2AQ9BY44 585 aaKnown RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 C6orf203Q9P0P8 240 aaPredicted RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 ANKRD31Q8N7Z5 1873 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 DDHD2O94830 711 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 TMCC1O94876 653 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 FBXO47Q5MNV8 452 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 LCA5Q86VQ0 697 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 DNAI2Q9GZS0 605 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 RAP2CQ9Y3L5 183 aa14.73□□□□□ -0.05
VPS35-210ENST00000568784 COL2A1P02458 1487 aaPredicted RBP14.73□□□□□ -0.05
VPS35-210ENST00000568784 CKMT2P17540 419 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 TKTL1P51854 596 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 NIPAL4Q0D2K0 466 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 PRKAA1Q13131 559 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 ADGRE1Q14246 886 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 LBX2Q6XYB7 198 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 TIFABQ6ZNK6 161 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 HFE2Q6ZVN8 426 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 LRRC43Q8N309 656 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 CATSPER1Q8NEC5 780 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 ZMAT2Q96NC0 199 aaKnown RBP14.72□□□□□ -0.05
VPS35-210ENST00000568784 PIF1Q9H611 641 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 NDUFA13Q9P0J0 144 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 NUP205Q92621 2012 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 PDE4DIPQ5VU43 2346 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 IGKV6D-21A0A0A0MT36 114 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 RECQL4O94761 1208 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 GSRP00390 522 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 PTPN1P18031 435 aaKnown RBP14.72□□□□□ -0.05
VPS35-210ENST00000568784 RPL10P27635 214 aaKnown RBP14.72□□□□□ -0.05
VPS35-210ENST00000568784 MYLK3Q32MK0 819 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 ZBTB49Q6ZSB9 765 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 TMEM110Q86TL2 294 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 KBTBD6Q86V97 674 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 NUP93Q8N1F7 819 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 ZFP28Q8NHY6 868 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 CYGBQ8WWM9 190 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 RTP4Q96DX8 246 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 FTHL17Q9BXU8 183 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 NOL11Q9H8H0 719 aaKnown RBP14.72□□□□□ -0.05
VPS35-210ENST00000568784 TRIP11Q15643 1979 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 FAM149AA5PLN7 773 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 FAM72CH0Y354 149 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 IRF6O14896 467 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 TIPRLO75663 272 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 LGALS2P05162 132 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 PSME3P61289 254 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 TMEM259Q4ZIN3 620 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 PAN2Q504Q3 1202 aaKnown RBP14.72□□□□□ -0.05
VPS35-210ENST00000568784 FAM72AQ5TYM5 149 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 FAM72DQ6L9T8 149 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 PGM2L1Q6PCE3 622 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 FAM72BQ86X60 149 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 FSTL5Q8N475 847 aaPredicted RBP14.72□□□□□ -0.05
VPS35-210ENST00000568784 TSPAN14Q8NG11 270 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 UPF3AQ9H1J1 476 aaKnown RBP14.72□□□□□ -0.05
VPS35-210ENST00000568784 POMKQ9H5K3 350 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 MKS1Q9NXB0 559 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 MTMR10Q9NXD2 777 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 AP4S1Q9Y587 144 aa14.72□□□□□ -0.05
VPS35-210ENST00000568784 ZBTB42B2RXF5 422 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 MT-CYBP00156 380 aaPredicted RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 EEF1B2P24534 225 aaKnown RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 ADARP55265 1226 aaKnown RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 STX1BP61266 288 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 CDKL1Q00532 357 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 CACNB2Q08289 660 aaPredicted RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 ANO4Q32M45 955 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 UGT2A3Q6UWM9 527 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 AFAP1L2Q8N4X5 818 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 TTC39CQ8N584 583 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 ANKRD52Q8NB46 1076 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 KHSRPQ92945 711 aaKnown RBP eCLIP14.71□□□□□ -0.05
VPS35-210ENST00000568784 EFHD1Q9BUP0 239 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 COQ10BQ9H8M1 238 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 NUDT5Q9UKK9 219 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 CRCPO75575 148 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 STMN1P16949 149 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 MATKP42679 507 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 ESRRGP62508 458 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 ZNF470Q6ECI4 717 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 SLC26A9Q7LBE3 791 aa14.71□□□□□ -0.05
VPS35-210ENST00000568784 RP9Q8TA86 221 aaKnown RBP14.71□□□□□ -0.05
VPS35-210ENST00000568784 BTBD9Q96Q07 612 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms