RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 VDRP11473 427 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 HGFP14210 728 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 NME1P15531 152 aaKnown RBP16.61■□□□□ 0.25
CLK3-223ENST00000568488 JUNDP17535 347 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 UGT1A5P35504 534 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 IGFBP7Q16270 282 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 PMF1Q6P1K2 205 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 VASH2Q86V25 355 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 CCAR2Q8N163 923 aaKnown RBP16.61■□□□□ 0.25
CLK3-223ENST00000568488 FBXL13Q8NEE6 735 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 WDR48Q8TAF3 677 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 FAM174AQ8TBP5 190 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 EEF2KMTQ96G04 330 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 SLC39A13Q96H72 371 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 KLF15Q9UIH9 416 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 NAALADL1Q9UQQ1 740 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 FARP1Q9Y4F1 1045 aaPredicted RBP16.61■□□□□ 0.25
CLK3-223ENST00000568488 HS3ST3A1Q9Y663 406 aa16.61■□□□□ 0.25
CLK3-223ENST00000568488 TLN1Q9Y490 2541 aaKnown RBP16.6■□□□□ 0.25
CLK3-223ENST00000568488 POM121BA6NF01 834 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 F5H5T6 163 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 AGRPO00253 132 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 O00370 1275 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 RIOK3O14730 519 aaKnown RBP16.6■□□□□ 0.25
CLK3-223ENST00000568488 PAK4O96013 591 aaPredicted RBP16.6■□□□□ 0.25
CLK3-223ENST00000568488 PSMC2P35998 433 aaKnown RBP16.6■□□□□ 0.25
CLK3-223ENST00000568488 MXI1P50539 228 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 PDX1P52945 283 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 SERINC3Q13530 473 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 SKIDA1Q1XH10 827 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 ZC3H12AQ5D1E8 599 aaKnown RBP16.6■□□□□ 0.25
CLK3-223ENST00000568488 PARGQ86W56 976 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 CEP57L1Q8IYX8 460 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 NAT6Q93015 286 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 SLC17A9Q9BYT1 436 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 ZSCAN16Q9H4T2 348 aaPredicted RBP16.6■□□□□ 0.25
CLK3-223ENST00000568488 GEMIN8Q9NWZ8 242 aaKnown RBP16.6■□□□□ 0.25
CLK3-223ENST00000568488 SEPT10Q9P0V9 454 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 MAN2B2Q9Y2E5 1009 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 PCDHGA4Q9Y5G9 962 aa16.6■□□□□ 0.25
CLK3-223ENST00000568488 SPTY2D1-AS1A0A0U1RR47 76 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 FYNP06241 537 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 CTSLP07711 333 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 JMJD7P0C870 316 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 LIPCP11150 499 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 CHRNA3P32297 505 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 GTF2H1P32780 548 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 PLK1P53350 603 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 ADKP55263 362 aaKnown RBP16.59■□□□□ 0.25
CLK3-223ENST00000568488 C1orf61Q13536 156 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 PDE1CQ14123 709 aaPredicted RBP16.59■□□□□ 0.25
CLK3-223ENST00000568488 CLCA4Q14CN2 919 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 B3GNT8Q7Z7M8 397 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 SLC35F3Q8IY50 421 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 SLC35F5Q8WV83 523 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 FAM149B1Q96BN6 582 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 LIN37Q96GY3 246 aaPredicted RBP16.59■□□□□ 0.25
CLK3-223ENST00000568488 PPP1R13BQ96KQ4 1090 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 PPP1R9BQ96SB3 815 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 FOXP3Q9BZS1 431 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 STRADBQ9C0K7 418 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 EPN3Q9H201 632 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 FAM13BQ9NYF5 915 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 PISDQ9UG56 409 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 SERTAD1Q9UHV2 236 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 MTMR6Q9Y217 621 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 TRAF3IP3Q9Y228 551 aa16.59■□□□□ 0.25
CLK3-223ENST00000568488 RP1P56715 2156 aa16.58■□□□□ 0.25
CLK3-223ENST00000568488 RELNP78509 3460 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 TPP1O14773 563 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 NEFLP07196 543 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 RABIFP47224 123 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 OXCT1P55809 520 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 YWHAEP62258 255 aaKnown RBP16.58■□□□□ 0.24
CLK3-223ENST00000568488 EIF3IQ13347 325 aaKnown RBP16.58■□□□□ 0.24
CLK3-223ENST00000568488 NNTQ13423 1086 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 CUL2Q13617 745 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 KYAT3Q6YP21 454 aaKnown RBP16.58■□□□□ 0.24
CLK3-223ENST00000568488 TAC4Q86UU9 113 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 SH2D3CQ8N5H7 860 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 BTN2A3PQ96KV6 586 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 ZNF396Q96N95 335 aaPredicted RBP16.58■□□□□ 0.24
CLK3-223ENST00000568488 BOCQ9BWV1 1114 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 PPP4R2Q9NY27 417 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 SPASTQ9UBP0 616 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 GULP1Q9UBP9 304 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 VPS28Q9UK41 221 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 KIAA1257Q9ULG3 409 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 PADI4Q9UM07 663 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 MAPK8IP1Q9UQF2 711 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 PCDHB11Q9Y5F2 797 aa16.58■□□□□ 0.24
CLK3-223ENST00000568488 MYO9AB2RTY4 2548 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 LRRK2Q5S007 2527 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 M0QYV0 167 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 RAD51BO15315 384 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 FBXO21O94952 628 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 ANXA6P08133 673 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 RPL13P26373 211 aaKnown RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 VASPP50552 380 aaPredicted RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 ENPEPQ07075 957 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms