RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 LEKR1Q6ZMV7 388 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 GBA3Q9H227 469 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 PDFQ9HBH1 243 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 RBM22Q9NW64 420 aaKnown RBP eCLIP31.19■■■□□ 2.58
CTCF-203ENST00000566078 CLEC4EQ9ULY5 219 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 TTLL3Q9Y4R7 772 aa31.19■■■□□ 2.58
CTCF-203ENST00000566078 KDELR3O43731 214 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 PENKP01210 267 aaPredicted RBP31.18■■■□□ 2.58
CTCF-203ENST00000566078 NFKB1P19838 968 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 GLDCP23378 1020 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 CD68P34810 354 aaPredicted RBP31.18■■■□□ 2.58
CTCF-203ENST00000566078 SEMA5AQ13591 1074 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 HNRNPDQ14103 355 aaKnown RBP31.18■■■□□ 2.58
CTCF-203ENST00000566078 PARP6Q2NL67 630 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 LY6G5CQ5SRR4 150 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 CNTD1Q8N815 330 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 SMRP1Q8NCR6 262 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 ACE2Q9BYF1 805 aaPredicted RBP31.18■■■□□ 2.58
CTCF-203ENST00000566078 HPCAL4Q9UM19 191 aa31.18■■■□□ 2.58
CTCF-203ENST00000566078 E7EVH7 732 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 GOLGA8MH3BSY2 632 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 HLA-DQB2P05538 268 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 RENBPP51606 427 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 CCDC25Q86WR0 208 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 ADGRG2Q8IZP9 1017 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 ZCCHC9Q8N567 271 aaKnown RBP31.17■■■□□ 2.58
CTCF-203ENST00000566078 FIBINQ8TAL6 211 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 EXOC4Q96A65 974 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 PWWP2AQ96N64 755 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 FEM1AQ9BSK4 669 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 ZFP14Q9HCL3 533 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 VPS28Q9UK41 221 aa31.17■■■□□ 2.58
CTCF-203ENST00000566078 SMAPO00193 183 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 APRTP07741 180 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 SLC10A7Q0GE19 358 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 LMAN2Q12907 356 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 TMCO4Q5TGY1 634 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 MARC1Q5VT66 337 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 TRIM68Q6AZZ1 485 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 TANGO2Q6ICL3 276 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 ASIC4Q96FT7 647 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 MARK1Q9P0L2 795 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 CD207Q9UJ71 328 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 COL4A3Q01955 1670 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 KIAA1549LQ6ZVL6 1849 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 CBX4O00257 560 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 TYRP14679 529 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 MAGEA6P43360 314 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 GAD2Q05329 585 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 LBRQ14739 615 aaKnown RBP31.16■■■□□ 2.58
CTCF-203ENST00000566078 EML3Q32P44 896 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 ZNF599Q96NL3 588 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 KIAA1522Q9P206 1035 aaPredicted RBP31.16■■■□□ 2.58
CTCF-203ENST00000566078 OR51B4Q9Y5P0 310 aa31.16■■■□□ 2.58
CTCF-203ENST00000566078 ANKRD36A6QL64 1941 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 TPSB2P20231 275 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 MMP13P45452 471 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 LMAN1P49257 510 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 TPSAB1Q15661 275 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 TMC3Q7Z5M5 1100 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 NECTIN4Q96NY8 510 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 GORASP1Q9BQQ3 440 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 FOXP3Q9BZS1 431 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 GLOD4Q9HC38 313 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 NT5MQ9NPB1 228 aa31.15■■■□□ 2.58
CTCF-203ENST00000566078 DNAJC17Q9NVM6 304 aaKnown RBP31.15■■■□□ 2.58
CTCF-203ENST00000566078 UBA2Q9UBT2 640 aaPredicted RBP31.15■■■□□ 2.58
CTCF-203ENST00000566078 CYP17A1P05093 508 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 CD70P32970 193 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 DHX9Q08211 1270 aaKnown RBP31.14■■■□□ 2.58
CTCF-203ENST00000566078 DHCR24Q15392 516 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 VITQ6UXI7 678 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 OTOP3Q7RTS5 596 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 TEX26Q8N6G2 289 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 E2F7Q96AV8 911 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 ALG14Q96F25 216 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 ZFYVE19Q96K21 471 aa31.14■■■□□ 2.58
CTCF-203ENST00000566078 USP15Q9Y4E8 981 aaPredicted RBP31.14■■■□□ 2.58
CTCF-203ENST00000566078 LAMP2P13473 410 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP31.13■■■□□ 2.57
CTCF-203ENST00000566078 TSPYL1Q9H0U9 437 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 ZNF446Q9NWS9 450 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 THG1LQ9NWX6 298 aaKnown RBP31.13■■■□□ 2.57
CTCF-203ENST00000566078 ACTL7AQ9Y615 435 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 XIRP2A4UGR9 3374 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 H3BQ06 376 aaPredicted RBP31.13■■■□□ 2.57
CTCF-203ENST00000566078 SNAP91O60641 907 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 ARF5P84085 180 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 ZNF235Q14590 738 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 APCDD1Q8J025 514 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 PDCD7Q8N8D1 485 aaKnown RBP31.13■■■□□ 2.57
CTCF-203ENST00000566078 DCAF4L2Q8NA75 395 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 MYLIPQ8WY64 445 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 EIF2B3Q9NR50 452 aaKnown RBP31.13■■■□□ 2.57
CTCF-203ENST00000566078 ABCB8Q9NUT2 735 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 ATP8A1Q9Y2Q0 1164 aa31.13■■■□□ 2.57
CTCF-203ENST00000566078 ADH1CP00326 375 aa31.12■■■□□ 2.57
CTCF-203ENST00000566078 ADH5P11766 374 aa31.12■■■□□ 2.57
CTCF-203ENST00000566078 HSPA9P38646 679 aaKnown RBP31.12■■■□□ 2.57
CTCF-203ENST00000566078 PRPSAP1Q14558 356 aa31.12■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms