RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ARHGAP17Q68EM7 881 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 SMYD5Q6GMV2 418 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 CTU1Q7Z7A3 348 aaKnown RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 DRAXINQ8NBI3 349 aaPredicted RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 ZFP28Q8NHY6 868 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 SGF29Q96ES7 293 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 MPHOSPH6Q99547 160 aaKnown RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 SEMA6AQ9H2E6 1030 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 ANLNQ9NQW6 1124 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 TLK1Q9UKI8 766 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 ADAM28Q9UKQ2 775 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 PRPF19Q9UMS4 504 aaKnown RBP13.44□□□□□ -0.26
CLN3-210ENST00000563874 RAP2CQ9Y3L5 183 aa13.44□□□□□ -0.26
CLN3-210ENST00000563874 AP1G1O43747 822 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 AP2A1O95782 977 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 MPOP05164 745 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 PAX3P23760 479 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 PPARGP37231 505 aaPredicted RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 GRM5P41594 1212 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 NUMBP49757 651 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 TTLL4Q14679 1199 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 MYLK3Q32MK0 819 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 ZNF484Q5JVG2 852 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 FAM219BQ5XKK7 198 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 RP9Q8TA86 221 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 ISL2Q96A47 359 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 FAM49AQ9H0Q0 323 aaPredicted RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 NXF3Q9H4D5 531 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 Q9H521 79 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 MRPL42Q9Y6G3 142 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 HNRNPRO43390 633 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 ASLP04424 464 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 RGS2P41220 211 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 ZBTB17Q13105 803 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 USP10Q14694 798 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 C9orf57Q5W0N0 161 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 NPWQ8N729 165 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 SNX31Q8N9S9 440 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 FAM81AQ8TBF8 368 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 MLPHQ9BV36 600 aaPredicted RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 SNX25Q9H3E2 840 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 RUVBL2Q9Y230 463 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 SNX10Q9Y5X0 201 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 I6L893 689 aaPredicted RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 CSPG5O95196 566 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 CYP2C8P10632 490 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 PTPN1P18031 435 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 NFKB1P19838 968 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 CD68P34810 354 aaPredicted RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 CYTH1Q15438 398 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 NOL9Q5SY16 702 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 OLFML2BQ68BL8 750 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 AMIGO2Q86SJ2 522 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 TMEM151AQ8N4L1 468 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 PCDH20Q8N6Y1 951 aaKnown RBP13.43□□□□□ -0.26
CLN3-210ENST00000563874 DRC3Q9H069 523 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 SETD4Q9NVD3 440 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 ADA2Q9NZK5 511 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 ATXN10Q9UBB4 475 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 CDYLQ9Y232 598 aa13.43□□□□□ -0.26
CLN3-210ENST00000563874 CENPFP49454 3210 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 RNASEH2AO75792 299 aaKnown RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 FGFR3P22607 806 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 ME2P23368 584 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 USP46P62068 366 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 ARHGAP1Q07960 439 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 PABPC1LQ4VXU2 614 aaKnown RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 LIPMQ5VYY2 423 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 UNC93AQ86WB7 457 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 FSTL5Q8N475 847 aaPredicted RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 LINC01465Q8N7H1 131 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 BEST2Q8NFU1 509 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 SLC7A14Q8TBB6 771 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 PDCD6IPQ8WUM4 868 aaKnown RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 ATP6V1E2Q96A05 226 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 CNDP1Q96KN2 507 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 CAMKK2Q96RR4 588 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 ELP3Q9H9T3 547 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 PREBQ9HCU5 417 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 NUP205Q92621 2012 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 DCLK1O15075 740 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 TIMM44O43615 452 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 PCSK6P29122 969 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 HOXA11P31270 313 aaPredicted RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 POU5F1BQ06416 359 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 DPYSQ14117 519 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 KYAT1Q16773 422 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 FBXO47Q5MNV8 452 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 IFNLR1Q8IU57 520 aaPredicted RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 SLC41A1Q8IVJ1 513 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 LSMEM2Q8N112 164 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 USP33Q8TEY7 942 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 DTNBP1Q96EV8 351 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 SNX27Q96L92 541 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 PHF12Q96QT6 1004 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 MRPL1Q9BYD6 325 aaKnown RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 PCDHAC1Q9H158 963 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 RCOR3Q9P2K3 495 aaPredicted RBP13.42□□□□□ -0.26
CLN3-210ENST00000563874 RAB26Q9ULW5 256 aa13.42□□□□□ -0.26
CLN3-210ENST00000563874 COPG1Q9Y678 874 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms