RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SERPINA13PQ6UXR4 307 aa10□□□□□ -0.81
CLK3-208ENST00000562626 CACUL1Q86Y37 369 aa10□□□□□ -0.81
CLK3-208ENST00000562626 C1orf210Q8IVY1 113 aa10□□□□□ -0.81
CLK3-208ENST00000562626 CCDC117Q8IWD4 279 aaPredicted RBP10□□□□□ -0.81
CLK3-208ENST00000562626 SH2D3CQ8N5H7 860 aa10□□□□□ -0.81
CLK3-208ENST00000562626 FRMD1Q8N878 549 aa10□□□□□ -0.81
CLK3-208ENST00000562626 ZNF557Q8N988 423 aaPredicted RBP10□□□□□ -0.81
CLK3-208ENST00000562626 EXD1Q8NHP7 514 aa10□□□□□ -0.81
CLK3-208ENST00000562626 PTPRN2Q92932 1015 aa10□□□□□ -0.81
CLK3-208ENST00000562626 NSMCE3Q96MG7 304 aa10□□□□□ -0.81
CLK3-208ENST00000562626 TLR10Q9BXR5 811 aa10□□□□□ -0.81
CLK3-208ENST00000562626 MKRN2Q9H000 416 aaKnown RBP10□□□□□ -0.81
CLK3-208ENST00000562626 MAGEH1Q9H213 219 aa10□□□□□ -0.81
CLK3-208ENST00000562626 KCNH6Q9H252 994 aa10□□□□□ -0.81
CLK3-208ENST00000562626 PRSS16Q9NQE7 514 aa10□□□□□ -0.81
CLK3-208ENST00000562626 DDX56Q9NY93 547 aaKnown RBP10□□□□□ -0.81
CLK3-208ENST00000562626 EIF2AK3Q9NZJ5 1116 aaKnown RBP10□□□□□ -0.81
CLK3-208ENST00000562626 RCOR3Q9P2K3 495 aaPredicted RBP10□□□□□ -0.81
CLK3-208ENST00000562626 HS3ST2Q9Y278 367 aa10□□□□□ -0.81
CLK3-208ENST00000562626 FCF1Q9Y324 198 aaKnown RBP10□□□□□ -0.81
CLK3-208ENST00000562626 MUSKO15146 869 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 GALR2O43603 387 aaPredicted RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 TIMM44O43615 452 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 NRDCO43847 1150 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 ATP9BO43861 1147 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 ASLP04424 464 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 ATP5BP06576 529 aaKnown RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 EPHX1P07099 455 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 SRPRAP08240 638 aaKnown RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 NDUFV2P19404 249 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 MAGEA9P43362 315 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 RGRP47804 291 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 CXCL12P48061 93 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 SERPINH1P50454 418 aaKnown RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 ZNF135P52742 658 aaPredicted RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 NDST2P52849 883 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 OXCT1P55809 520 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 YBEYP58557 167 aaPredicted RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 GALNT2Q10471 571 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 TCF15Q12870 199 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 CAMK2GQ13555 558 aaPredicted RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 ANGPT1Q15389 498 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 CYTH1Q15438 398 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 HNRNPA1L2Q32P51 320 aaKnown RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 PREPLQ4J6C6 727 aaPredicted RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 C9orf64Q5T6V5 341 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 KAZNQ674X7 775 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 HEATR6Q6AI08 1181 aaKnown RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 Q6ZVU0 165 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 RFX6Q8HWS3 928 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 SLC35F6Q8N357 371 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 TXLNBQ8N3L3 684 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 CHST14Q8NCH0 376 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 MDGA1Q8NFP4 955 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 KCNV2Q8TDN2 545 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 UCMAQ8WVF2 138 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 EXOC4Q96A65 974 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 ACDQ96AP0 544 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 HAUS1Q96CS2 278 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 FAM118BQ9BPY3 351 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 C2orf49Q9BVC5 232 aaPredicted RBP9.99□□□□□ -0.81
CLK3-208ENST00000562626 HEMGNQ9BXL5 484 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 TPSD1Q9BZJ3 242 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 TNKS2Q9H2K2 1166 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 RETREG1Q9H6L5 497 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 DTLQ9NZJ0 730 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 LHX3Q9UBR4 397 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 GON4LQ3T8J9 2241 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 VPS13AQ96RL7 3174 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 CACNA1HO95180 2353 aa9.99□□□□□ -0.81
CLK3-208ENST00000562626 PKD1L2Q7Z442 2459 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 TCRBV21S2A2A0A5A6 115 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 TTC24A2A3L6 582 aaPredicted RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 CCDC66A2RUB6 948 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 ZNF487B1APH4 448 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 ENC1O14682 589 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 MAFKO60675 156 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 CST8O60676 142 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 PRAMEF11O60813 436 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 ZRANB2O95218 330 aaKnown RBP eCLIP9.98□□□□□ -0.81
CLK3-208ENST00000562626 PAPSS2O95340 614 aaPredicted RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 CTSLP07711 333 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 GKP32189 559 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 FNTBP49356 437 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 VASPP50552 380 aaPredicted RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 CSTF1Q05048 431 aaKnown RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 SLC10A7Q0GE19 358 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 SRSF5Q13243 272 aaKnown RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 IHHQ14623 411 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 DLG2Q15700 870 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 IFI16Q16666 785 aaKnown RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 PARP15Q460N3 678 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 EOGTQ5NDL2 527 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 ATXN7L2Q5T6C5 722 aaPredicted RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 ANO7Q6IWH7 933 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 C22orf39Q6P5X5 142 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 MAMSTRQ6ZN01 415 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 NUDT18Q6ZVK8 323 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 RASSF3Q86WH2 238 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 VSIG1Q86XK7 387 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms