RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CLP1Q92989 425 aaKnown RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 TSPAN17Q96FV3 270 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 CFAP36Q96G28 342 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 SCLYQ96I15 445 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 PGLYRP2Q96PD5 576 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ZNF317Q96PQ6 595 aaPredicted RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 TGS1Q96RS0 853 aaKnown RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 TBL1YQ9BQ87 522 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 KIFC1Q9BW19 673 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ADAM33Q9BZ11 813 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 KDM4CQ9H3R0 1056 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 RC3H2Q9HBD1 1191 aaKnown RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 CYP4F11Q9HBI6 524 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 DNAJC17Q9NVM6 304 aaKnown RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 OSER1Q9NX31 292 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 HACD3Q9P035 362 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 PRKAG3Q9UGI9 489 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 TBK1Q9UHD2 729 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 NEU3Q9UQ49 428 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ANKRD6Q9Y2G4 727 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ARL2BPQ9Y2Y0 163 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 TTLL3Q9Y4R7 772 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 RPS6KL1Q9Y6S9 549 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 ERICH4A6NGS2 130 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 FAM72CH0Y354 149 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 KCNK1O00180 336 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 ZBTB24O43167 697 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 PRAMEF11O60813 436 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 ASMTLO95671 621 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 MOCS2O96007 188 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 JCHAINP01591 159 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 SERPINF2P08697 491 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 OR4Q2P0C623 313 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 NEFHP12036 1026 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 NFKB1P19838 968 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 TACR2P21452 398 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 GRK2P25098 689 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 CRHR1P34998 444 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 PPARGP37231 505 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 SLC26A3P40879 764 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 SKIV2L2P42285 1042 aaKnown RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 PITX1P78337 314 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 HTRA4P83105 476 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 FPGSQ05932 587 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 SLC20A2Q08357 652 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 NIPAL4Q0D2K0 466 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 GRM3Q14832 879 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 E2F5Q15329 346 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 SKIDA1Q1XH10 827 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 TSNAXIP1Q2TAA8 658 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 INO80DQ53TQ3 878 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 FAM72AQ5TYM5 149 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 KIAA0930Q6ICG6 404 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 FAM72DQ6L9T8 149 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 ZNF534Q76KX8 674 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 RASSF3Q86WH2 238 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 FAM72BQ86X60 149 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 MFN1Q8IWA4 741 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 CNTN4Q8IWV2 1026 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 ARHGAP12Q8IWW6 846 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 ZNF683Q8IZ20 524 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 NPWQ8N729 165 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 BANPQ8N9N5 519 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 HJURPQ8NCD3 748 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 UHMK1Q8TAS1 419 aaKnown RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 STON2Q8WXE9 905 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 NDRG1Q92597 394 aaKnown RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 DPF3Q92784 378 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 ISL2Q96A47 359 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 CCDC126Q96EE4 140 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 FEM1CQ96JP0 617 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 AGAP3Q96P47 875 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 PRMT1Q99873 361 aaKnown RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 ADGRE3Q9BY15 652 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 RHOBTB2Q9BYZ6 727 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 PITPNM3Q9BZ71 974 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 OSBPL7Q9BZF2 842 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 NMUR1Q9HB89 426 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 RBM22Q9NW64 420 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS39-204ENST00000561818 SFMBT1Q9UHJ3 866 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 MAGED2Q9UNF1 606 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 USP15Q9Y4E8 981 aaPredicted RBP7.65□□□□□ -1.18
VPS39-204ENST00000561818 INSL5Q9Y5Q6 135 aa7.65□□□□□ -1.18
VPS39-204ENST00000561818 TCRBV7S3A2A0A539 114 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 MSI1O43347 362 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 SNX3O60493 162 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 B4GALT3O60512 393 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 SIN3BO75182 1162 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 XYLBO75191 536 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 GJB5O95377 273 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 CRTAMO95727 393 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 OLFM2O95897 454 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 OAS1P00973 400 aaKnown RBP7.64□□□□□ -1.19
VPS39-204ENST00000561818 FGBP02675 491 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 CYBBP04839 570 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 HNRNPA1P09651 372 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS39-204ENST00000561818 ATF6P18850 670 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 CRABP2P29373 138 aa7.64□□□□□ -1.19
VPS39-204ENST00000561818 SERPINB5P36952 375 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms