RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 HOXA4Q00056 320 aaPredicted RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 PSG6Q00889 435 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 MAPK7Q13164 816 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 KCNB1Q14721 858 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 CCDC142Q17RM4 750 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 C1orf141Q5JVX7 400 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 CC2D1BQ5T0F9 858 aaKnown RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 INTS11Q5TA45 600 aaKnown RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 MAP3K21Q5TCX8 1036 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 NAA35Q5VZE5 725 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 SUMO4Q6EEV6 95 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 LVRNQ6Q4G3 990 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 ZNF788Q6ZQV5 615 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 RASGRP2Q7LDG7 609 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 ESX1Q8N693 406 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 PTGR2Q8N8N7 351 aaPredicted RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 MAFAQ8NHW3 353 aaPredicted RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 HERVK_113Q902F9 699 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 MCRS1Q96EZ8 462 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 EDC3Q96F86 508 aaKnown RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 MPP4Q96JB8 637 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 MAELQ96JY0 434 aaKnown RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 EIF2AK1Q9BQI3 630 aaKnown RBP4.11□□□□□ -1.75
HERC1-215ENST00000561436 HTATIP2Q9BUP3 242 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 MAF1Q9H063 256 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 PRDM16Q9HAZ2 1276 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 PDE11AQ9HCR9 933 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 NARFQ9UHQ1 456 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 FZD4Q9ULV1 537 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 TMEM98Q9Y2Y6 226 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 CNTNAP1P78357 1384 aa4.11□□□□□ -1.75
HERC1-215ENST00000561436 AGAP5A6NIR3 686 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 SMIM22K7EJ46 135 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 PRAMEF2O60811 474 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 USP12O75317 370 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 STARD3NLO95772 234 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 HNRNPCP07910 306 aaKnown RBP eCLIP4.1□□□□□ -1.75
HERC1-215ENST00000561436 CKMT1AP12532 417 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 PNPLA4P41247 253 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 CRKLP46109 303 aaKnown RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 ELLP55199 621 aaPredicted RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 DDX10Q13206 875 aaKnown RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 MFSD13AQ14CX5 517 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 DLGAP5Q15398 846 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 PFKFB3Q16875 520 aaPredicted RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 RUNDC3AQ59EK9 446 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 ATG16L1Q676U5 607 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 C16orf89Q6UX73 402 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 SLC39A5Q6ZMH5 540 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 ADAMTS18Q8TE60 1221 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 DPF1Q92782 380 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 SARAFQ96BY9 339 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 KTI12Q96EK9 354 aaPredicted RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 RBM17Q96I25 401 aaKnown RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 TWNKQ96RR1 684 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 SENP7Q9BQF6 1050 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 SLC26A6Q9BXS9 759 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 KRTAP17-1Q9BYP8 105 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 VPS33BQ9H267 617 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 SFXN1Q9H9B4 322 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 JMJD4Q9H9V9 463 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 ADARB2Q9NS39 739 aaKnown RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 ARL8BQ9NVJ2 186 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 GAR1Q9NY12 217 aaKnown RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 SH3BP4Q9P0V3 963 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 IFT80Q9P2H3 777 aaPredicted RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 POLKQ9UBT6 870 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 DNAJC16Q9Y2G8 782 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 PCDHA10Q9Y5I2 948 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 SIRT4Q9Y6E7 314 aaPredicted RBP4.1□□□□□ -1.75
HERC1-215ENST00000561436 WNT6Q9Y6F9 365 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 PASKQ96RG2 1323 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 QRICH2Q9H0J4 1663 aa4.1□□□□□ -1.75
HERC1-215ENST00000561436 COL24A1Q17RW2 1714 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 PCSK5Q92824 1860 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 FAM90A20PA6NIJ5 464 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 STX16-NPEPL1H3BU86 382 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 J3KRW8 73 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 M0QYT0 321 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 CLIC1O00299 241 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 STX16O14662 325 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 GUCY1B2O75343 617 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 SERPINB2P05120 415 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 APEHP13798 732 aaKnown RBP4.09□□□□□ -1.75
HERC1-215ENST00000561436 CPA1P15085 419 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 NDUFS1P28331 727 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 ELF1P32519 619 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 PSMC2P35998 433 aaKnown RBP4.09□□□□□ -1.75
HERC1-215ENST00000561436 MAP2K2P36507 400 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 VPS41P49754 854 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 OAZ1P54368 228 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 CYP4F2P78329 520 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 CHRNDQ07001 517 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.09□□□□□ -1.75
HERC1-215ENST00000561436 DDR1Q08345 913 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 LARS2Q15031 903 aaKnown RBP4.09□□□□□ -1.75
HERC1-215ENST00000561436 RNASE12Q5GAN4 147 aaKnown RBP4.09□□□□□ -1.75
HERC1-215ENST00000561436 COLEC12Q5KU26 742 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 DENND1BQ6P3S1 775 aa4.09□□□□□ -1.75
HERC1-215ENST00000561436 CLEC4GQ6UXB4 293 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms