RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 ITPK1Q13572 414 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 CRY1Q16526 586 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 ABRAXAS1Q6UWZ7 409 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PACS2Q86VP3 889 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 UNC93AQ86WB7 457 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 LRRC49Q8IUZ0 686 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 TMEM86AQ8N2M4 240 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 PYDC1Q8WXC3 89 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 MYDGFQ969H8 173 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 MAGEB10Q96LZ2 347 aaPredicted RBP13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 DGCR6LQ9BY27 220 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 COMMD3-BMI1R4GMX3 469 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 JCADQ9P266 1359 aa13.39□□□□□ -0.27
CSPG4P11-201ENST00000560634 RGSL1A5PLK6 1076 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 OR6B1O95007 311 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 MLYCDO95822 493 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZNF24P17028 368 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 TUFMP49411 452 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 CLCN5P51795 746 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 IRF8Q02556 426 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 BNIP2Q12982 314 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 ITGADQ13349 1161 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 PREPLQ4J6C6 727 aaPredicted RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SCUBE3Q8IX30 993 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 S100A13Q99584 98 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SPATA5L1Q9BVQ7 753 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 KIFC1Q9BW19 673 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 NFKBIZQ9BYH8 718 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 VPS45Q9NRW7 570 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZMYM5Q9UJ78 669 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SNX6Q9UNH7 406 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 CLTCL1P53675 1640 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SIGLEC16A6NMB1 481 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SASH3O75995 380 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 ITGA2P17301 1181 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 GSSP48637 474 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 USP46P62068 366 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 PDK4Q16654 411 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 RFX4Q33E94 735 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SH3BP5LQ7L8J4 393 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 FAM83AQ86UY5 434 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 PCDH20Q8N6Y1 951 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 TSEN2Q8NCE0 465 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 REPS2Q8NFH8 660 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 MAGEE2Q8TD90 523 aaPredicted RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SELENOMQ8WWX9 145 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 WNT8BQ93098 351 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 PPP3R2Q96LZ3 170 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 UXTQ9UBK9 157 aaPredicted RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 RSL24D1Q9UHA3 163 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 CASTOR2A6NHX0 329 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 CXCR2P25025 360 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 RPA3P35244 121 aaPredicted RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 IDH2P48735 452 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 PLK1P53350 603 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 AUHQ13825 339 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 EIF3MQ7L2H7 374 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 RP9Q8TA86 221 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 QKIQ96PU8 341 aaKnown RBP eCLIP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 PLGRKTQ9HBL7 147 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 CATSPERZQ9NTU4 200 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 EHD3Q9NZN3 535 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 ARIH1Q9Y4X5 557 aaPredicted RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SNCAIPQ9Y6H5 919 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 GAKO14976 1311 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 TAF4O00268 1085 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 TRIM38O00635 465 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 GSTM5P46439 218 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 HIRAP54198 1017 aaPredicted RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 PSME3P61289 254 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 TRAP1Q12931 704 aaKnown RBP13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 CES3Q6UWW8 571 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 GATAD2AQ86YP4 633 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 KBTBD2Q8IY47 623 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 SLC2A14Q8TDB8 520 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 TBCDQ9BTW9 1192 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 KIAA1683Q9H0B3 1180 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 RACGAP1Q9H0H5 632 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 CMTM6Q9NX76 183 aa13.38□□□□□ -0.27
CSPG4P11-201ENST00000560634 NFASCO94856 1347 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 UMODL1Q5DID0 1318 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 SMIM22K7EJ46 135 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 NTSP30990 170 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 DGCR6Q14129 220 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 GRIK4Q16099 956 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 INSCQ1MX18 579 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 MARK2Q7KZI7 788 aaKnown RBP13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 SEMA4DQ92854 862 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 HSFY1Q96LI6 401 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 SEMA6AQ9H2E6 1030 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 SPAG4Q9NPE6 437 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 PRDM8Q9NQV8 689 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 ETAA1Q9NY74 926 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 SAE1Q9UBE0 346 aaPredicted RBP13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 ZNF112Q9UJU3 913 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 CORO2BQ9UQ03 480 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 ABCA9Q8IUA7 1624 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 NEXMIFQ5QGS0 1516 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 BTNL10A8MVZ5 291 aa13.37□□□□□ -0.27
CSPG4P11-201ENST00000560634 HDAC3O15379 428 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms