RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CYP8B1Q9UNU6 501 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 AP4E1Q9UPM8 1137 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 EFR3BQ9Y2G0 817 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 SH3BP1Q9Y3L3 701 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 WDFY3Q8IZQ1 3526 aa12.12□□□□□ -0.47
LDLR-212ENST00000560467 DMXL2Q8TDJ6 3036 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 IGHV1OR15-9A0A0B4J2B8 117 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 A0A1W2PQF6 199 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 TAF4O00268 1085 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 OPHN1O60890 802 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 PYGMP11217 842 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 CD59P13987 128 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 NDUFV2P19404 249 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 KDELR1P24390 212 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 HTR7P34969 479 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 SLC25A11Q02978 314 aaKnown RBP12.11□□□□□ -0.47
LDLR-212ENST00000560467 ZNF211Q13398 564 aaPredicted RBP12.11□□□□□ -0.47
LDLR-212ENST00000560467 TRIP4Q15650 581 aaPredicted RBP12.11□□□□□ -0.47
LDLR-212ENST00000560467 SMTNL2Q2TAL5 461 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 KCNT1Q5JUK3 1230 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 BHLHA9Q7RTU4 235 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 TRMT11Q7Z4G4 463 aaKnown RBP12.11□□□□□ -0.47
LDLR-212ENST00000560467 VSIG1Q86XK7 387 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 TTC13Q8NBP0 860 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 CEP76Q8TAP6 659 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 COG1Q8WTW3 980 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 ALG3Q92685 438 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 OTUB2Q96DC9 234 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 HSPA12BQ96MM6 686 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 RUNDC3BQ96NL0 473 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 CAMK1GQ96NX5 476 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 HAPLN3Q96S86 360 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 FERMT1Q9BQL6 677 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 OSBPL8Q9BZF1 889 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 DCLK3Q9C098 648 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 TKTL2Q9H0I9 626 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 SLC6A17Q9H1V8 727 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 CD248Q9HCU0 757 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 SPHK2Q9NRA0 654 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 PIGVQ9NUD9 493 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 RCOR3Q9P2K3 495 aaPredicted RBP12.11□□□□□ -0.47
LDLR-212ENST00000560467 SFMBT1Q9UHJ3 866 aa12.11□□□□□ -0.47
LDLR-212ENST00000560467 LSM7Q9UK45 103 aaKnown RBP12.11□□□□□ -0.47
LDLR-212ENST00000560467 FREM2Q5SZK8 3169 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 CCDC188H7C350 402 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 ARHGAP33O14559 1287 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 ZNF185O15231 689 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 IRAK2O43187 625 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 ZNF189O75820 626 aaPredicted RBP12.1□□□□□ -0.47
LDLR-212ENST00000560467 NTSR1P30989 418 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 ZC3H12AQ5D1E8 599 aaKnown RBP12.1□□□□□ -0.47
LDLR-212ENST00000560467 GRAMD4Q6IC98 578 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 TRNP1Q6NT89 227 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 SLC36A4Q6YBV0 504 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 SPOCD1Q6ZMY3 1216 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 SLC13A5Q86YT5 568 aaPredicted RBP12.1□□□□□ -0.47
LDLR-212ENST00000560467 RFX6Q8HWS3 928 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 CREG2Q8IUH2 290 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 CHPFQ8IZ52 775 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 KCNV2Q8TDN2 545 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 PLD4Q96BZ4 506 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 BTN2A3PQ96KV6 586 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 FRMD8P1Q9BZ68 369 aaPredicted RBP12.1□□□□□ -0.47
LDLR-212ENST00000560467 OSBPL2Q9H1P3 480 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 L2HGDHQ9H9P8 463 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 DNAJC17Q9NVM6 304 aaKnown RBP12.1□□□□□ -0.47
LDLR-212ENST00000560467 NUDT5Q9UKK9 219 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 FZD10Q9ULW2 581 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 ZNF510Q9Y2H8 683 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 RAD54BQ9Y620 910 aa12.1□□□□□ -0.47
LDLR-212ENST00000560467 HELZP42694 1942 aaKnown RBP12.09□□□□□ -0.47
LDLR-212ENST00000560467 TYW5A2RUC4 315 aaKnown RBP12.09□□□□□ -0.47
LDLR-212ENST00000560467 PCNX2A6NKB5 2137 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 ZNF487B1APH4 448 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 NEDD8-MDP1E9PL57 170 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 CREB3O43889 395 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 SH3BP5O60239 455 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 GREM1O60565 184 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 HCAR3P49019 387 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 SCAPQ12770 1279 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 DPYSL2Q16555 572 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 KAZNQ674X7 775 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 RABEPKQ7Z6M1 372 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 RAB44Q7Z6P3 723 aaPredicted RBP12.09□□□□□ -0.47
LDLR-212ENST00000560467 CCDC117Q8IWD4 279 aaPredicted RBP12.09□□□□□ -0.47
LDLR-212ENST00000560467 RASGEF1CQ8N431 466 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 ARFGAP1Q8N6T3 406 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 RAPGEF5Q92565 580 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 UBXN4Q92575 508 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 MS4A14Q96JA4 679 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 ZNF670Q9BS34 389 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 SNRNP25Q9BV90 132 aaKnown RBP12.09□□□□□ -0.47
LDLR-212ENST00000560467 CARD6Q9BX69 1037 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 HEMGNQ9BXL5 484 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 SIK2Q9H0K1 926 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 CATSPERBQ9H7T0 1116 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 KLHL11Q9NVR0 708 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 OSER1Q9NX31 292 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 CACNA2D2Q9NY47 1150 aa12.09□□□□□ -0.47
LDLR-212ENST00000560467 OR12D3Q9UGF7 316 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms