RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CACNA1IQ9P0X4 2223 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 TARSL2A2RTX5 802 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 CFAP69A5D8W1 941 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 PRRT4C9JH25 899 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 K7EQS6 105 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 PGRMC1O00264 195 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 TRIM24O15164 1050 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 MFSD11O43934 449 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 PRAMEF11O60813 436 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 FGGP02679 453 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 CHRNB1P11230 501 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 CD72P21854 359 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 CES1P23141 567 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 NTSR1P30989 418 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 TIE1P35590 1138 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 ACVRL1P37023 503 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 HSPA9P38646 679 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 RPS9P46781 194 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 LMNB2Q03252 620 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 GBE1Q04446 702 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 RAD51Q06609 339 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 AP1B1Q10567 949 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 SFSWAPQ12872 951 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 CCINQ13939 588 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 HNRNPDQ14103 355 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 STARD3Q14849 445 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 LLGL1Q15334 1064 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 FUT11Q495W5 492 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 ACCSLQ4AC99 568 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 DCAF12L1Q5VU92 463 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 DARS2Q6PI48 645 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 SERPINA13PQ6UXR4 307 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 CDKL3Q8IVW4 592 aaPredicted RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 ARHGAP12Q8IWW6 846 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 CCDC13Q8IYE1 715 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 CHPFQ8IZ52 775 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 RASGEF1CQ8N431 466 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 ATP11CQ8NB49 1132 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 FLCNQ8NFG4 579 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 ACTRT1Q8TDG2 376 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 ISG20Q96AZ6 181 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 PSMB7Q99436 277 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 PRRX2Q99811 253 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 CEP44Q9C0F1 390 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 NOL6Q9H6R4 1146 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 FBRSQ9HAH7 460 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 FBRSL1Q9HCM7 1045 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 DTLQ9NZJ0 730 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 SEPT3Q9UH03 358 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 AMACRQ9UHK6 382 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 FEZ2Q9UHY8 353 aaPredicted RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 VPS51Q9UID3 782 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 INTS6Q9UL03 887 aaKnown RBP9.42□□□□□ -0.9
LDLR-210ENST00000559340 HS3ST2Q9Y278 367 aa9.42□□□□□ -0.9
LDLR-210ENST00000559340 EDDM13A0A1B0GTR0 161 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 CHURC1-FNTBB4DL54 471 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 MATN3O15232 486 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ATP9BO43861 1147 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 SYNCRIPO60506 623 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 SNAP91O60641 907 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 RNASEH1O60930 286 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 RNF40O75150 1001 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ZMPSTE24O75844 475 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 TARSP26639 723 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 STIP1P31948 543 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 CXCR5P32302 372 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ACTN2P35609 894 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 KIR2DL1P43626 348 aaPredicted RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 SERPINH1P50454 418 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 SEC13P55735 322 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 EIF3EP60228 445 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 SNRPD1P62314 119 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 OTUD4Q01804 1114 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 CKAP4Q07065 602 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 PPIDQ08752 370 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 ZNF234Q14588 700 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ZNF235Q14590 738 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 GRM3Q14832 879 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 NOMO1Q15155 1222 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 DLG2Q15700 870 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 CCNG2Q16589 344 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 C2orf27AQ580R0 203 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 IER5LQ5T953 404 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 MARC1Q5VT66 337 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 HEATR6Q6AI08 1181 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 AADACL2Q6P093 401 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 DSG4Q86SJ6 1040 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 PLPP6Q8IY26 295 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 SH2D3CQ8N5H7 860 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 PCDH20Q8N6Y1 951 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 NPWQ8N729 165 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 PJA1Q8NG27 643 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 OR52K2Q8NGK3 314 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ACTL9Q8TC94 416 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 USP33Q8TEY7 942 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 CYB5D2Q8WUJ1 264 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ZNF592Q92610 1267 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 PBXIP1Q96AQ6 731 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 CLDN23Q96B33 292 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 P2RY11Q96G91 374 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms