RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ELAVL2Q12926 359 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 GRIK3Q13003 919 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 ADRM1Q16186 407 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 CYP27C1Q4G0S4 372 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 C9orf57Q5W0N0 161 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 LMBRD2Q68DH5 695 aaPredicted RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 ACAD10Q6JQN1 1059 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 DCLRE1AQ6PJP8 1040 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 TMEM270Q6UE05 265 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 C1orf229Q6ZS94 237 aaPredicted RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 FAM214BQ7L5A3 538 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 ZNF571Q7Z3V5 609 aaPredicted RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 ARHGEF19Q8IW93 802 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 REXO1L1PQ8IX06 675 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 EFCAB13Q8IY85 973 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 THEM5Q8N1Q8 247 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 GALNT15Q8N3T1 639 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 TMEM199Q8N511 208 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 TMEM35BQ8NCS4 154 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 APPL2Q8NEU8 664 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 NRG4Q8WWG1 115 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 TMEM176AQ96HP8 235 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 FAM46AQ96IP4 442 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 TUBGCP5Q96RT8 1024 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 NCAPGQ9BPX3 1015 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 APOL6Q9BWW8 343 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 MRPL9Q9BYD2 267 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 LHX5Q9H2C1 402 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 SNX25Q9H3E2 840 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 HIPK3Q9H422 1215 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 POFUT1Q9H488 388 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 NXF3Q9H4D5 531 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 AGO3Q9H9G7 860 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 MRPL47Q9HD33 250 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 CISHQ9NSE2 258 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 SEPT11Q9NVA2 429 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 TMEM51Q9NW97 253 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 TMEM161AQ9NX61 479 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 WDR35Q9P2L0 1181 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 RNF14Q9UBS8 474 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 NXF1Q9UBU9 619 aaKnown RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 BARX2Q9UMQ3 279 aaPredicted RBP5.35□□□□□ -1.55
LDLR-209ENST00000558528 ZNF281Q9Y2X9 895 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 VPS13AQ96RL7 3174 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 DOCK3Q8IZD9 2030 aa5.35□□□□□ -1.55
LDLR-209ENST00000558528 MAST4O15021 2626 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GVINP1Q7Z2Y8 2422 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GPR179Q6PRD1 2367 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 A0A1W2PPC4 97 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 CTAGE9A4FU28 777 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PRAMEF25A6NGN4 478 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 ARL5CA6NH57 179 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 F5H0A9 414 aaPredicted RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 EIF3FO00303 357 aaPredicted RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 SYT5O00445 386 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 THAP12O43422 761 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 NRP2O60462 931 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 CALB1P05937 261 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PYGLP06737 847 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 CLTBP09497 229 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 FAM87AP0C7U9 286 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 SNRPBP14678 240 aaKnown RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 PRLRP16471 622 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 FPR2P25090 351 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PCSK1P29120 753 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GNL1P36915 607 aaPredicted RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 ARHGAP25P42331 645 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 NSFP46459 744 aaKnown RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 SLC6A11P48066 632 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 HK3P52790 923 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 TLE2Q04725 743 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GFPT1Q06210 699 aaPredicted RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 ADCY2Q08462 1091 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 INCA1Q0VD86 236 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 SMARCB1Q12824 385 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 TUSC3Q13454 348 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PMS2P11Q13670 270 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 CNGA2Q16280 664 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 MPEG1Q2M385 716 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 ARL13BQ3SXY8 428 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 SGO2Q562F6 1265 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 NOMO2Q5JPE7 1267 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 WDR45BQ5MNZ6 344 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 BTBD8Q5XKL5 378 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 CNKSR3Q6P9H4 555 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GJB7Q6PEY0 223 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 TMPRSS7Q7RTY8 843 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 FAM26EQ8N5C1 309 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 RNF152Q8N8N0 203 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PCYOX1LQ8NBM8 494 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 DBF4BQ8NFT6 615 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 OR6B3Q8NGW1 331 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 CXorf38Q8TB03 319 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 ZNF606Q8WXB4 792 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 HEXIM2Q96MH2 286 aaKnown RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 PPP1R10Q96QC0 940 aaKnown RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 GAD1Q99259 594 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 FOXB1Q99853 325 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms