RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PCSK7Q16549 785 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ZNF423Q2M1K9 1284 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 SOWAHAQ2M3V2 549 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 PERM1Q5SV97 790 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 FAM160B1Q5W0V3 765 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 CLEC6AQ6EIG7 209 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 RWDD4Q6NW29 188 aaKnown RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 CBR4Q8N4T8 237 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ARL10Q8N8L6 244 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 CATSPER1Q8NEC5 780 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 FNIP1Q8TF40 1166 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 NAA50Q9GZZ1 169 aaKnown RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 FAM49AQ9H0Q0 323 aaPredicted RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 CXCL16Q9H2A7 254 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 POLR1BQ9H9Y6 1135 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 MOCS1Q9NZB8 636 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 BCLAF3A2AJT9 711 aaKnown RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 RGL2O15211 777 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 MAN1A2O60476 641 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ATG7O95352 703 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 OCM2P0CE71 109 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 OCMP0CE72 109 aaPredicted RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 MAP4P27816 1152 aaKnown RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 FAM91A1Q658Y4 838 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ARHGAP17Q68EM7 881 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 TMEM26Q6ZUK4 368 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 CYP4V2Q6ZWL3 525 aaPredicted RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 TTC30AQ86WT1 665 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ZNF567Q8N184 647 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 IPMKQ8NFU5 416 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 CANT1Q8WVQ1 401 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 LPAR1Q92633 364 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 NXNL1Q96CM4 212 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 LRRC39Q96DD0 335 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 CCDC28BQ9BUN5 200 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 LHX5Q9H2C1 402 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ADNPQ9H2P0 1102 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 FAM96AQ9H5X1 160 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 FBRSL1Q9HCM7 1045 aaKnown RBP11.52□□□□□ -0.57
LDLR-208ENST00000558518 PRM3Q9NNZ6 103 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 RIMS3Q9UJD0 308 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 RNF11Q9Y3C5 154 aa11.52□□□□□ -0.57
LDLR-208ENST00000558518 ADGRA2Q96PE1 1338 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 NRAPQ86VF7 1730 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 M0QYT0 321 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 NR5A2O00482 541 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 CCL22O00626 93 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 JCHAINP01591 159 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 IMPDH2P12268 514 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 EFNA5P52803 228 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 AP3M2P53677 418 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 CDH13P55290 713 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 MPP1Q00013 466 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 SLC6A3Q01959 620 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 FASTKQ14296 549 aaKnown RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 TBCELQ5QJ74 424 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 SPPL2CQ8IUH8 684 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 KBTBD7Q8WVZ9 684 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 HDAC11Q96DB2 347 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 FBXL20Q96IG2 436 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 GJD4Q96KN9 370 aaPredicted RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 FTHL17Q9BXU8 183 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 TBC1D23Q9NUY8 699 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 DPP3Q9NY33 737 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 DSEQ9UL01 958 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 XIRP1Q702N8 1843 aaKnown RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 ZBTB11O95625 1053 aaPredicted RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 NCAM1P13591 858 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 NMBRP28336 390 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 KPNA1P52294 538 aaPredicted RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 DEFB106AQ8N104 65 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 AHI1Q8N157 1196 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 ZNF280CQ8ND82 737 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 ADCY4Q8NFM4 1077 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 RDM1Q8NG50 284 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 CXorf38Q8TB03 319 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 C12orf43Q96C57 262 aaKnown RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 MPHOSPH6Q99547 160 aaKnown RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 MTG1Q9BT17 334 aaPredicted RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 MED10Q9BTT4 135 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 TEX13BQ9BXU2 312 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 UPF3AQ9H1J1 476 aaKnown RBP11.51□□□□□ -0.57
LDLR-208ENST00000558518 DGKBQ9Y6T7 804 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 SCN9AQ15858 1988 aa11.51□□□□□ -0.57
LDLR-208ENST00000558518 CLDN5O00501 218 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 ZNF195O14628 629 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 PMPCBO75439 489 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 H6PDO95479 791 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 YWHAQP27348 245 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 XIAPP98170 497 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 SNX29P2Q8IUI4 249 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 FSTL5Q8N475 847 aaPredicted RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 SPATA33Q96N06 139 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 FRMD8Q9BZ67 464 aaPredicted RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 CCDC90BQ9GZT6 254 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 POMKQ9H5K3 350 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 BARX2Q9UMQ3 279 aaPredicted RBP11.5□□□□□ -0.57
LDLR-208ENST00000558518 SH3GLB1Q9Y371 365 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 STYXL1Q9Y6J8 313 aa11.5□□□□□ -0.57
LDLR-208ENST00000558518 C9IYK1 514 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms