RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 FBXL12Q9NXK8 326 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 WSB2Q9NYS7 404 aaPredicted RBP8.87□□□□□ -0.99
USP3-208ENST00000558285 IP6K2Q9UHH9 426 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 HS3ST2Q9Y278 367 aa8.87□□□□□ -0.99
USP3-208ENST00000558285 CBX4O00257 560 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 AKR1B10O60218 316 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 DFNA5O60443 496 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 SIN3BO75182 1162 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 RNASEH2AO75792 299 aaKnown RBP8.86□□□□□ -0.99
USP3-208ENST00000558285 CER1O95813 267 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 GOT1P17174 413 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 BCKDHBP21953 392 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 NFKBIAP25963 317 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 EPHB2P29323 1055 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 SLC8A1P32418 973 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 ARL4AP40617 200 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 COPAP53621 1224 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 MAMLD1Q13495 774 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 GRM3Q14832 879 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 BOLA3Q53S33 107 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 ODF2Q5BJF6 829 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 FSCBQ5H9T9 825 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 SWT1Q5T5J6 900 aaKnown RBP8.86□□□□□ -0.99
USP3-208ENST00000558285 CXorf57Q6NSI4 855 aaKnown RBP8.86□□□□□ -0.99
USP3-208ENST00000558285 SLC23A3Q6PIS1 610 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 ARMCX6Q7L4S7 300 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 BNIPLQ7Z465 357 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 TFAP2DQ7Z6R9 452 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 ADAT2Q7Z6V5 191 aaKnown RBP8.86□□□□□ -0.99
USP3-208ENST00000558285 BBS5Q8N3I7 341 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 LZTR1Q8N653 840 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 PCDH20Q8N6Y1 951 aaKnown RBP8.86□□□□□ -0.99
USP3-208ENST00000558285 OR2T34Q8NGX1 318 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 WFDC5Q8TCV5 224 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 NSMCE1Q8WV22 266 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 SNX19Q92543 992 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 XPO4Q9C0E2 1151 aaKnown RBP8.86□□□□□ -0.99
USP3-208ENST00000558285 TTYH3Q9C0H2 523 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 TMEM248Q9NWD8 314 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 PILRBQ9UKJ0 227 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 MYOFQ9NZM1 2061 aa8.86□□□□□ -0.99
USP3-208ENST00000558285 METTL12A8MUP2 240 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 H3BRJ5 948 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 MYO1CO00159 1063 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 MYO1FO00160 1098 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 MCF2LO15068 1137 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 BCAT2O15382 392 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 CCP110O43303 1012 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CREB3O43889 395 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 OPHN1O60890 802 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 SERPINB6P35237 376 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 PCK1P35558 622 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 PSMD8P48556 350 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 AFF3P51826 1226 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 HDAC4P56524 1084 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 SNRPD1P62314 119 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 FOXK1P85037 733 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 PTP4A2Q12974 167 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 SUZ12Q15022 739 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 DLG2Q15700 870 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 C15orf59Q2T9L4 293 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 ERMARDQ5T6L9 678 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 PEAR1Q5VY43 1037 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 ALKBH5Q6P6C2 394 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 ZNF571Q7Z3V5 609 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 PHLDB2Q86SQ0 1253 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 PRPF39Q86UA1 669 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 FAM124AQ86V42 546 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CIR1Q86X95 450 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 MMAAQ8IVH4 418 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 MAP7D3Q8IWC1 876 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 APCDD1Q8J025 514 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 C17orf53Q8N3J3 647 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 SH2D3CQ8N5H7 860 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 JOSD2Q8TAC2 188 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 ISG20Q96AZ6 181 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 LMLNQ96KR4 655 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CCDC42Q96M95 316 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 TRIM5Q9C035 493 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 ISCUQ9H1K1 167 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 MIR1-1HGQ9H1L0 117 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 OSGEPQ9NPF4 335 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 DLL3Q9NYJ7 618 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 MYO1AQ9UBC5 1043 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 ADAMTS1Q9UHI8 967 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 MBD1Q9UIS9 605 aaPredicted RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 INTS6Q9UL03 887 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 HCN2Q9UL51 889 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 TRIOO75962 3097 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 SSU72P8A0A1W2PR75 194 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 ARHGAP42A6NI28 874 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 TTC34A8MYJ7 566 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 EEF2KO00418 725 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 YKT6O15498 198 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 LRIG2O94898 1065 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 H2AFZP0C0S5 128 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CD27P26842 260 aa8.85□□□□□ -0.99
USP3-208ENST00000558285 CALRP27797 417 aaKnown RBP8.85□□□□□ -0.99
USP3-208ENST00000558285 MZF1P28698 734 aaPredicted RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms