RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 A0A1W2PRU2 124 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 MAGEB16A2A368 324 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 J3KR12 359 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 CLASP2O75122 1294 aaKnown RBP12.71□□□□□ -0.37
SHMT2-233ENST00000557529 XYLBO75191 536 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 CSPG5O95196 566 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 RHOCP08134 193 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 POU2F2P09086 479 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 MYOGP15173 224 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 MGAT1P26572 445 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 GCAP28676 217 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 ATP1A2P50993 1020 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 SESN2P58004 480 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-233ENST00000557529 RPS24P62847 133 aaKnown RBP12.71□□□□□ -0.37
SHMT2-233ENST00000557529 CDH17Q12864 832 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 MPP3Q13368 585 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 GPM6BQ13491 265 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 CAMK1Q14012 370 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 SPARCL1Q14515 664 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 TMED2Q15363 201 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 ARHGAP15Q53QZ3 475 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 TMCO4Q5TGY1 634 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 CASC4Q6P4E1 433 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 ZNF783Q6ZMS7 281 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 UNC5AQ6ZN44 842 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 OTOP3Q7RTS5 596 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 FAM217AQ8IXS0 508 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 CNPY4Q8N129 248 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 BBS5Q8N3I7 341 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 MAB21L3Q8N8X9 362 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 DNAAF3Q8N9W5 541 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 OR52K1Q8NGK4 314 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 ADAMTS19Q8TE59 1207 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 SLC22A17Q8WUG5 538 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 WBP2Q969T9 261 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 PABPC5Q96DU9 382 aaKnown RBP12.71□□□□□ -0.37
SHMT2-233ENST00000557529 OXNAD1Q96HP4 312 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-233ENST00000557529 PAFAH2Q99487 392 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 CAPS2Q9BXY5 557 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 MAN1C1Q9NR34 630 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 VPS45Q9NRW7 570 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 SENP1Q9P0U3 644 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 TBC1D30Q9Y2I9 924 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 SH3BP1Q9Y3L3 701 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 TTLL3Q9Y4R7 772 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 IKBKGQ9Y6K9 419 aa12.71□□□□□ -0.37
SHMT2-233ENST00000557529 ANAPC1Q9H1A4 1944 aa12.71□□□□□ -0.38
SHMT2-233ENST00000557529 GRXCR1A8MXD5 290 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 GREM1O60565 184 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 SHOX2O60902 331 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-233ENST00000557529 ARHGEF15O94989 841 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 POLBP06746 335 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 PRKCHP24723 683 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 IRS1P35568 1242 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 ACVRL1P37023 503 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 MAGEA10P43363 369 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-233ENST00000557529 SHHQ15465 462 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 ARMC3Q5W041 872 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 ADGRD1Q6QNK2 874 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 HTR3DQ70Z44 454 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 EXOC3L1Q86VI1 746 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 MPP5Q8N3R9 675 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 TBL1YQ9BQ87 522 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 IL22Q9GZX6 179 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 NT5MQ9NPB1 228 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 ZDHHC7Q9NXF8 308 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 CTNNAL1Q9UBT7 734 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 TBK1Q9UHD2 729 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 ZMYM5Q9UJ78 669 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 ARHGAP26Q9UNA1 814 aa12.7□□□□□ -0.38
SHMT2-233ENST00000557529 MYO18AQ92614 2054 aaKnown RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 GFRA2O00451 464 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 KDELR3O43731 214 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 TSPAN3O60637 253 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 ALDH1A2O94788 518 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 INHBAP08476 426 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 MDH1P40925 334 aaKnown RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 OXCT1P55809 520 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 SLC10A7Q0GE19 358 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 FRG1Q14331 258 aaKnown RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 ZNF235Q14590 738 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 RFTN1Q14699 578 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 LBRQ14739 615 aaKnown RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 EFTUD2Q15029 972 aaKnown RBP eCLIP12.69□□□□□ -0.382e-9■■■■■ 58
SHMT2-233ENST00000557529 KBTBD12Q3ZCT8 623 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 SPANXN3Q5MJ09 141 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 IL31Q6EBC2 164 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 ZNF449Q6P9G9 518 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 LRRC6Q86X45 466 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 CCDC117Q8IWD4 279 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 CPXM2Q8N436 756 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 SHKBP1Q8TBC3 707 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 SLC44A1Q8WWI5 657 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 ARNTL2Q8WYA1 636 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 TTC17Q96AE7 1141 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 TMA16Q96EY4 203 aaKnown RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 IMP4Q96G21 291 aaKnown RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 ZNF419Q96HQ0 510 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-233ENST00000557529 SELENOSQ9BQE4 189 aa12.69□□□□□ -0.38
SHMT2-233ENST00000557529 FSD1LQ9BXM9 530 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms