RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 SCML2Q9UQR0 700 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 MYO7AQ13402 2215 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 HMX2A2RU54 273 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 SYN3O14994 580 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 YWHAQP27348 245 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 SERPINB6P35237 376 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 HCAR3P49019 387 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 TBX4P57082 545 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 TEX44Q53QW1 395 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 SPOUT1Q5T280 376 aaKnown RBP11.91□□□□□ -0.5
SHMT2-212ENST00000554467 LRRC8BQ6P9F7 803 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 DNAJC9Q8WXX5 260 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 PTPRN2Q92932 1015 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 MYEOVQ96EZ4 313 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 FCRL3Q96P31 734 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-212ENST00000554467 MECRQ9BV79 373 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 SMG5Q9UPR3 1016 aaKnown RBP11.91□□□□□ -0.5
SHMT2-212ENST00000554467 FGFR3P22607 806 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 PGGT1BP53609 377 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 ARHGEF6Q15052 776 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 ALFQ53S48 1182 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 ARTNQ5T4W7 220 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 RAP1GAP2Q684P5 730 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 C4orf22Q6V702 233 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 HDAC11Q96DB2 347 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF333Q96JL9 665 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF778Q96MU6 729 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 NUDCD1Q96RS6 583 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 MX2P20592 715 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 PRKCHP24723 683 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 OR1D2P34982 312 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 MRPL58Q14197 206 aaKnown RBP11.91□□□□□ -0.5
SHMT2-212ENST00000554467 SETDB1Q15047 1291 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 LRRC8CQ8TDW0 803 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 AUTS2Q8WXX7 1259 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 MFSD3Q96ES6 412 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 TTPALQ9BTX7 342 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 VN1R3Q9BXE9 311 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 FRMD8Q9BZ67 464 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-212ENST00000554467 OSBPL2Q9H1P3 480 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 MYLK2Q9H1R3 596 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 NMRK1Q9NWW6 199 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 SENP1Q9P0U3 644 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 IGSF9Q9P2J2 1179 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 HAO1Q9UJM8 370 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 BLOC1S6Q9UL45 172 aa11.91□□□□□ -0.5
SHMT2-212ENST00000554467 CCDC195A0A1B0GUA6 201 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 SLC12A8A0AV02 714 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 PITPNM1O00562 1244 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 SPAG6O75602 509 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 T-ENOLP0DO92 83 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 MAGEA10P43363 369 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 TTC39BQ5VTQ0 682 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 SPNS2Q8IVW8 549 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 RBM12BQ8IXT5 1001 aaKnown RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 IPMKQ8NFU5 416 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF669Q96BR6 464 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 C8orf48Q96LL4 319 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 SERPINB11Q96P15 392 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 KLHL5Q96PQ7 755 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 PREBQ9HCU5 417 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 CHRAC1Q9NRG0 131 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 PHTF1Q9UMS5 762 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 FAM159BA6NKW6 160 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 KCNU1A8MYU2 1149 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 TRDMT1O14717 391 aaKnown RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 PMPCBO75439 489 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 ATF6P18850 670 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 ALDH7A1P49419 539 aaKnown RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 KCNQ1P51787 676 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 INHBCP55103 352 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 MAXP61244 160 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 ZSCAN18Q8TBC5 510 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 ATP2A3Q93084 1043 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 IGSF8Q969P0 613 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 SLC7A6OSQ96CW6 309 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 FUBP3Q96I24 572 aaKnown RBP eCLIP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 TEKT5Q96M29 485 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 HAPLN3Q96S86 360 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 AGAP2Q99490 1192 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 GBA3Q9H227 469 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 FBXO44Q9H4M3 255 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 DENND2DQ9H6A0 471 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-212ENST00000554467 NPHS2Q9NP85 383 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 MARCH2Q9P0N8 246 aa11.9□□□□□ -0.5
SHMT2-212ENST00000554467 PATJQ8NI35 1801 aa11.9□□□□□ -0.51
SHMT2-212ENST00000554467 CAPN15O75808 1086 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 AP2A1O95782 977 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 SNRPAP09012 282 aaKnown RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 DNAJB2P25686 324 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 MAGEA8P43361 318 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 PCSK7Q16549 785 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 BRMS1LQ5PSV4 323 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 SLC39A5Q6ZMH5 540 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 APLFQ8IW19 511 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-212ENST00000554467 CRIPAKQ8N1N5 446 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 CFAP52Q8N1V2 620 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 SCML4Q8N228 414 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 FBXO22Q8NEZ5 403 aa11.89□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF75CPQ92670 426 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms