RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MFAP3LO75121 409 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 RNASEH2AO75792 299 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 SEMA4FO95754 770 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 MYBL1P10243 752 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 OXTRP30559 389 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 DRD3P35462 400 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 VASPP50552 380 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 KRT83P78385 493 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 ZBTB16Q05516 673 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 TBX2Q13207 712 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 ELAVL3Q14576 367 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 STPG1Q5TH74 334 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 PEAR1Q5VY43 1037 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 IL31Q6EBC2 164 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 VPS36Q86VN1 386 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 HDDC3Q8N4P3 179 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 RTL3Q8N8U3 475 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 OR2A12Q8NGT7 310 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 SNX19Q92543 992 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 TRIM11Q96F44 468 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 PPP1R9BQ96SB3 815 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 EDEM2Q9BV94 578 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 NUP85Q9BW27 656 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 TRIM5Q9C035 493 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 ABHD10Q9NUJ1 306 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 SPTLC3Q9NUV7 552 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 EIF2B4Q9UI10 523 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 PPM1HQ9ULR3 514 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 MFHAS1Q9Y4C4 1052 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 SCINQ9Y6U3 715 aa11.84□□□□□ -0.51
CCDC88C-208ENST00000554165 CHD5Q8TDI0 1954 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 NYNRINQ9P2P1 1898 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 C4orf47A7E2U8 309 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 MEI4A8MW99 385 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 PRR5-ARHGAP8B1AHC4 643 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 RNF8O76064 485 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 FSBPO95073 299 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 GOT1P17174 413 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 GKP32189 559 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 MAPK8P45983 427 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 MAPKAPK2P49137 400 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 DNA2P51530 1060 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ARHGAP8P85298 464 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 POLD3Q15054 466 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 SMTNL2Q2TAL5 461 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 TTC31Q49AM3 519 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 KCNT1Q5JUK3 1230 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ERMARDQ5T6L9 678 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 C22orf39Q6P5X5 142 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 NCEH1Q6PIU2 408 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 SARM1Q6SZW1 724 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 LAYNQ6UX15 382 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ZNF783Q6ZMS7 281 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 DPY19L3Q6ZPD9 716 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 TP53INP2Q8IXH6 220 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ZCCHC9Q8N567 271 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 CADM4Q8NFZ8 388 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 OR6K2Q8NGY2 324 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 C1orf216Q8TAB5 229 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 PIP4K2CQ8TBX8 421 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 NETO1Q8TDF5 533 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 FNIP1Q8TF40 1166 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 DNASE2BQ8WZ79 361 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 OR8D1Q8WZ84 308 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 FOXJ1Q92949 421 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ARRDC3Q96B67 414 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 BIRC7Q96CA5 298 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 HMCESQ96FZ2 354 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 CELF6Q96J87 481 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 EPAS1Q99814 870 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 OMDQ99983 421 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 BTBD1Q9H0C5 482 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ZWILCHQ9H900 591 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 EBF2Q9HAK2 575 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 CAPN10Q9HC96 672 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ANAPC7Q9UJX3 599 aa11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-208ENST00000554165 DOCK9Q9BZ29 2069 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 DNAH14Q0VDD8 3507 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 RASA4BC9J798 803 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC30A4O14863 429 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 WNT9AO14904 365 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 MCF2LO15068 1137 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 RASA4O43374 803 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 PRPSAP2O60256 369 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 RAMP2O60895 175 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 ADH1BP00325 375 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 IGHV4-34P06331 123 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 SERPINF2P08697 491 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 ENGP17813 658 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 C5AR1P21730 350 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 CHRNA3P32297 505 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 SERPINH1P50454 418 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 TPI1P60174 286 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 BNC1Q01954 994 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 CNTN1Q12860 1018 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 TRIM14Q14142 442 aa11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 PUM1Q14671 1186 aaKnown RBP eCLIP11.82□□□□□ -0.52
CCDC88C-208ENST00000554165 SLC18A3Q16572 532 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms