RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZMYND15Q9H091 742 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 UBP1Q9NZI7 540 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 SOX13Q9UN79 622 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 COPEO14579 308 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 DHRS4L1P0CG22 281 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 CSF2RAP15509 400 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 ALDH1A3P47895 512 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 YBEYP58557 167 aaPredicted RBP26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 TNK2Q07912 1038 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 PARP15Q460N3 678 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 CERCAMQ5T4B2 595 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 RASSF3Q86WH2 238 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 ZNF669Q96BR6 464 aaPredicted RBP26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 TRMT2BQ96GJ1 504 aaKnown RBP26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 CYP4F11Q9HBI6 524 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 TRPM5Q9NZQ8 1165 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 SLC17A7Q9P2U7 560 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 YIPF1Q9Y548 306 aa26.82■■□□□ 1.88
CCDC88C-205ENST00000553403 HMX2A2RU54 273 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 TRIM43BA6NCK2 446 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 ACSL4O60488 711 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 URODP06132 367 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 ADRA1DP25100 572 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 ITGB8P26012 769 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 CORO7P57737 925 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 FAM117BQ6P1L5 589 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 NECAB2Q7Z6G3 386 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 GPR65Q8IYL9 337 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 SPATA22Q8NHS9 363 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 TRIM43Q96BQ3 446 aaPredicted RBP26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 APOL2Q9BQE5 337 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 ENTPD7Q9NQZ7 604 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 MAFFQ9ULX9 164 aa26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 USP15Q9Y4E8 981 aaPredicted RBP26.81■■□□□ 1.88
CCDC88C-205ENST00000553403 F5H5T6 163 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 ADRA1AP35348 466 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 ETV4P43268 484 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 PPP3CCP48454 512 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 KCNQ1P51787 676 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 BMPR2Q13873 1038 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 UBE2Q1Q7Z7E8 422 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 TMEM199Q8N511 208 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 ACMSDQ8TDX5 336 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 AZIN2Q96A70 460 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 PLD4Q96BZ4 506 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 CPNE1Q99829 537 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 KIFC1Q9BW19 673 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 SLC25A51Q9H1U9 297 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 SP110Q9HB58 689 aa26.8■■□□□ 1.88
CCDC88C-205ENST00000553403 ZCWPW2A0A1B0GU75 182 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 ATP9BO43861 1147 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 RAMP2O60895 175 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 BAIAP3O94812 1187 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 SLC11A2P49281 568 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 MPP3Q13368 585 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 VEPH1Q14D04 833 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 ZKSCAN8Q15776 578 aaPredicted RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 MROH9Q5TGP6 573 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 ARMC3Q5W041 872 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 CES3Q6UWW8 571 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 SPATA21Q7Z572 469 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 TMCO2Q7Z6W1 182 aaPredicted RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 TEX26Q8N6G2 289 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 OTUD6BQ8N6M0 293 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 NSMCE1Q8WV22 266 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 ZNF75CPQ92670 426 aaPredicted RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 SRPK1Q96SB4 655 aaKnown RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 PITPNM3Q9BZ71 974 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 NACA2Q9H009 215 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 ZFATQ9P243 1243 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 MT-CYBP00156 380 aaPredicted RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 RAG1P15918 1043 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 GP5P40197 560 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 HARS2P49590 506 aaKnown RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 IL10RBQ08334 325 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 POLD3Q15054 466 aaPredicted RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 GRTP1Q5TC63 336 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 CCDC121Q6ZUS5 278 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 IPMKQ8NFU5 416 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 PLCD4Q9BRC7 762 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 FICDQ9BVA6 458 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 IQCGQ9H095 443 aaKnown RBP26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 STARD13Q9Y3M8 1113 aa26.79■■□□□ 1.88
CCDC88C-205ENST00000553403 COCHO43405 550 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 GJB5O95377 273 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 ERVK-10P10266 1014 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 PPM1AP35813 382 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 PCID2Q5JVF3 399 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 MARC1Q5VT66 337 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 LGI2Q8N0V4 545 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 TXNDC16Q9P2K2 825 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 STK39Q9UEW8 545 aa26.78■■□□□ 1.88
CCDC88C-205ENST00000553403 J3KR12 359 aa26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 TPH1P17752 444 aa26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 SERINC3Q13530 473 aa26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 TAF12Q16514 161 aa26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 DENND5AQ6IQ26 1287 aa26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 PTCD2Q8WV60 388 aaKnown RBP26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 FAM111AQ96PZ2 611 aa26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms