RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CCR1P32246 355 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ACVRL1P37023 503 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 GARSP41250 739 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 NEK3P51956 506 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ACLYP53396 1101 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 CDH13P55290 713 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 CDK16Q00536 496 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SP3Q02447 781 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SEMA5AQ13591 1074 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 RCN1Q15293 331 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 LRRC8BQ6P9F7 803 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 LINGO4Q6UY18 593 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ATG14Q6ZNE5 492 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 C4orf50Q6ZRC1 276 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SCD5Q86SK9 330 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SERINC5Q86VE9 423 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 RELL1Q8IUW5 271 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 OR7D4Q8NG98 312 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SOCS4Q8WXH5 440 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 STMN2Q93045 179 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 PSMG2Q969U7 264 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ALKBH8Q96BT7 664 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 NXNL1Q96CM4 212 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 VPS39Q96JC1 886 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SLC45A3Q96JT2 553 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 FRMD8P1Q9BZ68 369 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ABCG8Q9H221 673 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 FAM96AQ9H5X1 160 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 TRPC7Q9HCX4 862 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 BPIFA1Q9NP55 256 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 TBC1D13Q9NVG8 400 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 TAS2R1Q9NYW7 299 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 APOBEC2Q9Y235 224 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 COMMD10Q9Y6G5 202 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 TLL2Q9Y6L7 1015 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 OTOFQ9HC10 1997 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 CDH23Q9H251 3354 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 A0A0U1RQF3 1178 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SRRM3A6NNA2 597 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 GABRDO14764 452 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ADAM12O43184 909 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 STAU1O95793 577 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 CYBAP13498 195 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 MX2P20592 715 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 LRPAP1P30533 357 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SPRP35270 261 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 GP5P40197 560 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ETV4P43268 484 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 TBX4P57082 545 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 FKBP1BP68106 108 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 PLIN5Q00G26 463 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 PRKD1Q15139 912 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 VARS2Q5ST30 1063 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 RBM20Q5T481 1227 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 SCIMPQ6UWF3 145 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 RNF180Q86T96 592 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 WDR75Q8IWA0 830 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF781Q8N8C0 355 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 RMDN1Q96DB5 314 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 MYEOVQ96EZ4 313 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 HMCESQ96FZ2 354 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 CATSPER2Q96P56 530 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 KCNK13Q9HB14 408 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 UTP6Q9NYH9 597 aaKnown RBP5.69□□□□□ -1.5
LIMA1-215ENST00000552823 GIT1Q9Y2X7 761 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 USP3Q9Y6I4 520 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 WASF2Q9Y6W5 498 aa5.69□□□□□ -1.5
LIMA1-215ENST00000552823 CFAP73A6NFT4 308 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 FAM159BA6NKW6 160 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SPECC1L-ADORA2AF8WAN1 911 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TXNDC9O14530 226 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CA12O43570 354 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 MGRN1O60291 552 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PLIN3O60664 434 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CKBP12277 381 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ALADP13716 330 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ITGB6P18564 788 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ARRB2P32121 409 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SERPINB6P35237 376 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SCNN1BP51168 640 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 RPS24P62847 133 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SLC18A2Q05940 514 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 SLC12A1Q13621 1099 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 DPYSQ14117 519 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 MBTPS1Q14703 1052 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 MUM1Q2TAK8 710 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GALNTL6Q49A17 601 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CLLU1OSQ5K130 101 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 C1orf146Q5VVC0 180 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CNSTQ6PJW8 725 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 NAPRTQ6XQN6 538 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 PHTF2Q8N3S3 785 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 TEX9Q8N6V9 391 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 GBP7Q8N8V2 638 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 RBM15BQ8NDT2 890 aaKnown RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 URGCPQ8TCY9 931 aa5.68□□□□□ -1.5
LIMA1-215ENST00000552823 ZNF419Q96HQ0 510 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 RAB3IPQ96QF0 476 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-215ENST00000552823 CRISPLD1Q9H336 500 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms