RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TMEM217Q8N7C4 229 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 NCSTNQ92542 709 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 CNOT9Q92600 299 aaKnown RBP4.47□□□□□ -1.69
VPS29-205ENST00000548539 CENPIQ92674 756 aaPredicted RBP4.47□□□□□ -1.69
VPS29-205ENST00000548539 C7orf26Q96N11 449 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 GATA5Q9BWX5 397 aaPredicted RBP4.47□□□□□ -1.69
VPS29-205ENST00000548539 EPHX3Q9H6B9 360 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 SEMA4BQ9NPR2 832 aaPredicted RBP4.47□□□□□ -1.69
VPS29-205ENST00000548539 NRIP3Q9NQ35 241 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 KRT84Q9NSB2 600 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 ZDHHC7Q9NXF8 308 aa4.47□□□□□ -1.69
VPS29-205ENST00000548539 EMSYQ7Z589 1322 aa4.46□□□□□ -1.69
VPS29-205ENST00000548539 DYTNA2CJ06 578 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 HBP1O60381 514 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 MOSPD3O75425 235 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 CHRM5P08912 532 aaPredicted RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 TACR3P29371 465 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 GPD2P43304 727 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 MTNR1AP48039 350 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 EIF5P55010 431 aaKnown RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 DCAF7P61962 342 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 FOXD4Q12950 439 aaPredicted RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 TBCEQ15813 527 aaPredicted RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 PROSER3Q2NL68 480 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 SLC45A4Q5BKX6 768 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 ZNF766Q5HY98 468 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 ZNF667Q5HYK9 610 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 NAA35Q5VZE5 725 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 SUMO4Q6EEV6 95 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 ATF7IPQ6VMQ6 1270 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 RBM44Q6ZP01 1051 aaKnown RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 KLBQ86Z14 1044 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 GHDCQ8N2G8 530 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 SCAIQ8N9R8 606 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 SEMA6DQ8NFY4 1073 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 RAB40AQ8WXH6 277 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 ASB2Q96Q27 587 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 NPLQ9BXD5 320 aaPredicted RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 CADM1Q9BY67 442 aaKnown RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 Q9N2J8 555 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 TXNRD2Q9NNW7 524 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 PCDHB16Q9NRJ7 776 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 SLC25A10Q9UBX3 287 aaPredicted RBP4.46□□□□□ -1.7
VPS29-205ENST00000548539 SLC8A2Q9UPR5 921 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 DTX4Q9Y2E6 619 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 BTBD3Q9Y2F9 522 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 KAT6AQ92794 2004 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 SPATA31A5Q5VU36 1347 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 SPATA31A7Q8IWB4 1347 aa4.46□□□□□ -1.7
VPS29-205ENST00000548539 A0A087X0M5 115 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 CYP2D7A0A087X1C5 515 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 A0A1B0GX30 115 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 SLC22A23A1A5C7 686 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 PGPEP1LA6NFU8 196 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 LINC01548A6NM66 108 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 INPPL1O15357 1258 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 STRNO43815 780 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 CEP104O60308 925 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 USO1O60763 962 aaKnown RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 EIF5BO60841 1220 aaKnown RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 RNASEH2AO75792 299 aaKnown RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 RNF8O76064 485 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 NFATC1O95644 943 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 LDHCP07864 332 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 FCGR2AP12318 317 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 EPHA8P29322 1005 aaPredicted RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 HOXA7P31268 230 aaPredicted RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 GJC1P36383 396 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 POLD2P49005 469 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 RHAGQ02094 409 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 SLC18A3Q16572 532 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 PRICKLE4Q2TBC4 344 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 C10orf76Q5T2E6 689 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 GJB7Q6PEY0 223 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 TECPR1Q7Z6L1 1165 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 CPLX4Q7Z7G2 160 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 PLD5Q8N7P1 536 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 SETD9Q8NE22 299 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 TNIP2Q8NFZ5 429 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 OR52N4Q8NGI2 321 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 OSR1Q8TAX0 266 aaPredicted RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 DENND1AQ8TEH3 1009 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 KAT2BQ92831 832 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 SH3KBP1Q96B97 665 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 FRMD8Q9BZ67 464 aaPredicted RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 PDCL3Q9H2J4 239 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 PLEKHA5Q9HAU0 1116 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 BEX4Q9NWD9 120 aaPredicted RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 SWAP70Q9UH65 585 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 FBXO2Q9UK22 296 aaPredicted RBP4.45□□□□□ -1.7
VPS29-205ENST00000548539 SARDHQ9UL12 918 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 MAFFQ9ULX9 164 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 TNFSF13BQ9Y275 285 aa4.45□□□□□ -1.7
VPS29-205ENST00000548539 FNDC1Q4ZHG4 1894 aaPredicted RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 TARSL2A2RTX5 802 aaKnown RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 TEX22C9J3V5 150 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 MSI1O43347 362 aaKnown RBP4.44□□□□□ -1.7
VPS29-205ENST00000548539 PLAUP00749 431 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 UBL4AP11441 157 aa4.44□□□□□ -1.7
VPS29-205ENST00000548539 RPS6KB1P23443 525 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms