RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 METTL3Q86U44 580 aaKnown RBP13.69□□□□□ -0.22
PTCH1-215ENST00000547672 TRABD2AQ86V40 505 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 CTAGE3PQ8IX95 158 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 TP53INP2Q8IXH6 220 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 LRRN4Q8WUT4 740 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 POF1BQ8WVV4 589 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 DYDC1Q8WWB3 177 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 TMA16Q96EY4 203 aaKnown RBP13.69□□□□□ -0.22
PTCH1-215ENST00000547672 HMCESQ96FZ2 354 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 TBL1YQ9BQ87 522 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 FSD1LQ9BXM9 530 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 PRKD2Q9BZL6 878 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 RNF38Q9H0F5 515 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 EPN3Q9H201 632 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 TRABDQ9H4I3 376 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 TRPC7Q9HCX4 862 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 EURLQ9NYK6 297 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 MOCS1Q9NZB8 636 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 CXXC1Q9P0U4 656 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-215ENST00000547672 SEPT3Q9UH03 358 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 TBK1Q9UHD2 729 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 AGO1Q9UL18 857 aaKnown RBP13.69□□□□□ -0.22
PTCH1-215ENST00000547672 SH3BP1Q9Y3L3 701 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 NR2E3Q9Y5X4 410 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 NUP205Q92621 2012 aa13.69□□□□□ -0.22
PTCH1-215ENST00000547672 CXorf51AA0A1B0GTR3 108 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 GMNCA6NCL1 334 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 FAM47DPA6NHR8 397 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 FAM159BA6NKW6 160 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 KDELR3O43731 214 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 FAM155BO75949 473 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 CNTN5O94779 1100 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 USP1O94782 785 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ZWINTO95229 277 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 EPOP01588 193 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 RHOCP08134 193 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 LINC00271P0C7V0 271 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 MGAT1P26572 445 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 LSP1P33241 339 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 HADHAP40939 763 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 IL9RQ01113 521 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ITKQ08881 620 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ZNF235Q14590 738 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 LBRQ14739 615 aaKnown RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 KBTBD12Q3ZCT8 623 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 FAM133BQ5BKY9 247 aaKnown RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 PCID2Q5JVF3 399 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 SYCP2LQ5T4T6 812 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ARTNQ5T4W7 220 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 IL31Q6EBC2 164 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 HTR3DQ70Z44 454 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ZNF534Q76KX8 674 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 NLRP9Q7RTR0 991 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 IGDCC3Q8IVU1 814 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 SRRM1Q8IYB3 904 aaKnown RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 CPXM2Q8N436 756 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 CNTD1Q8N815 330 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 DEPDC1BQ8WUY9 529 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 IMP4Q96G21 291 aaKnown RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 CEP41Q9BYV8 373 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 POLR1EQ9GZS1 481 aaKnown RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ATXN3LQ9H3M9 355 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 NOL6Q9H6R4 1146 aaKnown RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 IL21Q9HBE4 155 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ARNT2Q9HBZ2 717 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 MRM3Q9HC36 420 aaKnown RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 GKN1Q9NS71 199 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 TBC1D30Q9Y2I9 924 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 ZFP37Q9Y6Q3 630 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-215ENST00000547672 DOCK4Q8N1I0 1966 aa13.68□□□□□ -0.22
PTCH1-215ENST00000547672 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 GOLGA6L7A0A1B0GV03 622 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 LINC01553A4QN01 128 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 C2orf78A6NCI8 922 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 BANF1O75531 89 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 CYBBP04839 570 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 CKMP06732 381 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 CHN1P15882 459 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 MPPE1Q53F39 396 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 RALGPS1Q5JS13 557 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 TMEM135Q86UB9 458 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 SPATS2Q86XZ4 545 aaKnown RBP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 PPM1NQ8N819 430 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 KIAA1958Q8N8K9 716 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 PPHLN1Q8NEY8 458 aaKnown RBP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 OR52K1Q8NGK4 314 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 USP33Q8TEY7 942 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 DCAKDQ8WVC6 231 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 PABPC5Q96DU9 382 aaKnown RBP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 TGS1Q96RS0 853 aaKnown RBP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 NSRP1Q9H0G5 558 aaKnown RBP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 LMAN2LQ9H0V9 348 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 CCDC134Q9H6E4 229 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 PPANQ9NQ55 473 aaKnown RBP13.67□□□□□ -0.22
PTCH1-215ENST00000547672 NDFIP2Q9NV92 336 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 ZDHHC7Q9NXF8 308 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 ZNF212Q9UDV6 495 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 SOX13Q9UN79 622 aa13.67□□□□□ -0.22
PTCH1-215ENST00000547672 TTLL3Q9Y4R7 772 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms