RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 IGLV3-27P01718 113 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 LIFP15018 202 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 GRNP28799 593 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 CCKBRP32239 447 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 SLC11A2P49281 568 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 CLDN10P78369 228 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 DCAF6Q58WW2 860 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 EPM2AIP1Q7L775 607 aaPredicted RBP15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 ZNF557Q8N988 423 aaPredicted RBP15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 ZNF507Q8TCN5 953 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 PARD3BQ8TEW8 1205 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 GLMNQ92990 594 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 NKD1Q969G9 470 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 CPEB1Q9BZB8 566 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 NUCKS1Q9H1E3 243 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 CCDC39Q9UFE4 941 aa15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 IPO11Q9UI26 975 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.82■□□□□ 0.12
CLSTN3-216ENST00000545663 CSMD2Q7Z408 3487 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 RIOK3O14730 519 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 NKX2-8O15522 239 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 BNIP3LO60238 219 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 PCDH8O95206 1070 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 LUC7L3O95232 432 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 ASS1P00966 412 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 CTSLP07711 333 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 CELA2BP08218 269 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 ZNF18P17022 549 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 NOS2P35228 1153 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 KLRB1Q12918 225 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 PDE1CQ14123 709 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 ACCSLQ4AC99 568 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 PRRT3Q5FWE3 981 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 C1QL3Q5VWW1 255 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 NUGGCQ68CJ6 796 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 NEK5Q6P3R8 708 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 Q6ZVU0 165 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 STXBP4Q6ZWJ1 553 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 MAMDC2Q7Z304 686 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 CCDC65Q8IXS2 484 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 TMX3Q96JJ7 454 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 HEXIM2Q96MH2 286 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 UBXN6Q9BZV1 441 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 CLPBQ9H078 707 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 APOBEC3GQ9HC16 384 aaKnown RBP15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 SIRPGQ9P1W8 387 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 HS3ST3A1Q9Y663 406 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 AKAP9Q99996 3911 aa15.81■□□□□ 0.12
CLSTN3-216ENST00000545663 A0A087X0B3 334 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 VPS4BO75351 444 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 PAK4O96013 591 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 TRIM21P19474 475 aaKnown RBP15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 NNMTP40261 264 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 ARSDP51689 593 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 BECN1Q14457 450 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 TCEA2Q15560 299 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 TMEM259Q4ZIN3 620 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 LACTB2Q53H82 288 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 KYAT3Q6YP21 454 aaKnown RBP15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 TMPRSS9Q7Z410 1059 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 KYQ8NBH2 561 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 PMEPA1Q969W9 287 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 TMEM74Q96NL1 305 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 CLIC6Q96NY7 704 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 IRX2Q9BZI1 471 aaPredicted RBP15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 SPASTQ9UBP0 616 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 VPS4AQ9UN37 437 aa15.8■□□□□ 0.12
CLSTN3-216ENST00000545663 WIPF3A6NGB9 483 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 C1QTNF3-AMACRE9PGA6 284 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 LMO7DNF2Z398 122 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 K7ELQ4 463 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 MCF2LO15068 1137 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 DUX1O43812 170 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 EXOC3O60645 756 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 CD2BP2O95400 341 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 ANXA6P08133 673 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 PRKAR1AP10644 381 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 CCL4P13236 92 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 PDGFRAP16234 1089 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 AP3M2P53677 418 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 ZFP36L1Q07352 338 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 ZACNQ401N2 412 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 MS4A13Q5J8X5 152 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 ESRP1Q6NXG1 681 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 CCDC117Q8IWD4 279 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 Q8N9G6 341 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 TATDN2Q93075 761 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 LRRC61Q9BV99 259 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 SLC17A9Q9BYT1 436 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 LRRN3Q9H3W5 708 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 APOBEC3BQ9UH17 382 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 XPO7Q9UIA9 1087 aaKnown RBP15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 TP53TG5Q9Y2B4 290 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 FBN3Q75N90 2809 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 SDK2Q58EX2 2172 aa15.79■□□□□ 0.12
CLSTN3-216ENST00000545663 MTORP42345 2549 aa15.78■□□□□ 0.12
CLSTN3-216ENST00000545663 KPNA3O00505 521 aaPredicted RBP15.78■□□□□ 0.12
CLSTN3-216ENST00000545663 HLA-DRAP01903 254 aa15.78■□□□□ 0.12
CLSTN3-216ENST00000545663 RPN1P04843 607 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms