RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 DTLQ9NZJ0 730 aa14.78□□□□□ -0.04
TNFRSF1A-216ENST00000543995 DLGAP2Q9P1A6 1054 aa14.78□□□□□ -0.04
TNFRSF1A-216ENST00000543995 IPO11Q9UI26 975 aaKnown RBP14.78□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SLCO3A1Q9UIG8 710 aa14.78□□□□□ -0.04
TNFRSF1A-216ENST00000543995 ACTL7AQ9Y615 435 aa14.78□□□□□ -0.04
TNFRSF1A-216ENST00000543995 TTC28Q96AY4 2481 aa14.78□□□□□ -0.04
TNFRSF1A-216ENST00000543995 TTC34A8MYJ7 566 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 CHURC1-FNTBB4DL54 471 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 J3KR12 359 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SGK1O00141 431 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SYNCRIPO60506 623 aaKnown RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 GPR37L1O60883 481 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 ADAM23O75077 832 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 MT-CO1P00395 513 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 ATP1A1P05023 1023 aaKnown RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 CHRM1P11229 460 aaPredicted RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 HLA-EP13747 358 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 MX2P20592 715 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 PRKCHP24723 683 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 CXCR5P32302 372 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 GARSP41250 739 aaKnown RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 NR2C2P49116 596 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SERPINH1P50454 418 aaKnown RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SLC20A2Q08357 652 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 GALNT2Q10471 571 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SLC10A2Q12908 348 aaPredicted RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 GAS6Q14393 721 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 BBS12Q6ZW61 710 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 BZW1Q7L1Q6 419 aaKnown RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SH2D3CQ8N5H7 860 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 KDM1BQ8NB78 822 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 CCNYQ8ND76 341 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 MYO19Q96H55 970 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 TMEM245Q9H330 911 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 SAE1Q9UBE0 346 aaPredicted RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 UBA2Q9UBT2 640 aaPredicted RBP14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 MMP17Q9ULZ9 603 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 HS3ST2Q9Y278 367 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 RAD54BQ9Y620 910 aa14.77□□□□□ -0.04
TNFRSF1A-216ENST00000543995 K7ERQ8 282 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 BNIP3LO60238 219 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 PRAMEF11O60813 436 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 SRCP12931 536 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 PECAM1P16284 738 aaPredicted RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 AVPR2P30518 371 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CLCN6P51797 869 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 IL10RBQ08334 325 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 STARD3Q14849 445 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 PDK1Q15118 436 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 DLG2Q15700 870 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 SYT13Q7L8C5 426 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 LRRC49Q8IUZ0 686 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 NSMCE1Q8WV22 266 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 WDR24Q96S15 920 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 GABRG3Q99928 467 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 HERPUD2Q9BSE4 406 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 PDFQ9HBH1 243 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 POLR3BQ9NW08 1133 aaPredicted RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 SUN2Q9UH99 717 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 FCF1Q9Y324 198 aaKnown RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 EDDM13A0A1B0GTR0 161 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CXorf51AA0A1B0GTR3 108 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 APOC4-APOC2K7ER74 178 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 PPP1R12AO14974 1030 aaPredicted RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 SMAD6O43541 496 aaKnown RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 ATP9BO43861 1147 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CEP104O60308 925 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 MAFKO60675 156 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 APOC2P02655 101 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 VASPP50552 380 aaPredicted RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CCR3P51677 355 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 ENPP2Q13822 863 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CRY1Q16526 586 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 HNRNPA1L2Q32P51 320 aaKnown RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 TIGD7Q6NT04 549 aaPredicted RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 C22orf39Q6P5X5 142 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 METTL3Q86U44 580 aaKnown RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 ZC3H18Q86VM9 953 aaKnown RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 LRRN4Q8WUT4 740 aa14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 NAPGQ99747 312 aaPredicted RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 POLMQ9NP87 494 aaPredicted RBP14.76□□□□□ -0.05
TNFRSF1A-216ENST00000543995 BDP1A6H8Y1 2624 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CTAGE9A4FU28 777 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 ZBTB24O43167 697 aaPredicted RBP14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 TMCC1O94876 653 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CD160O95971 181 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CXCL12P48061 93 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 AP1B1Q10567 949 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 TMEM92Q6UXU6 159 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 ADAT2Q7Z6V5 191 aaKnown RBP14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 SLC13A5Q86YT5 568 aaPredicted RBP14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 DTWD2Q8NBA8 298 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CASKIN2Q8WXE0 1202 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 HDAC11Q96DB2 347 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 PBKQ96KB5 322 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 OLFM3Q96PB7 478 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 OSBPL9Q96SU4 736 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 CEP44Q9C0F1 390 aa14.75□□□□□ -0.05
TNFRSF1A-216ENST00000543995 TNKS2Q9H2K2 1166 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms