RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SP110Q9HB58 689 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 VPS51Q9UID3 782 aa17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 MTF2Q9Y483 593 aaPredicted RBP17.89■□□□□ 0.45
CLSTN3-210ENST00000540931 APOC4-APOC2K7ER74 178 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 DFFAO00273 331 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 CES2O00748 559 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 ALOX15BO15296 676 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 DDX3YO15523 660 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 LAMTOR5O43504 91 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 CST8O60676 142 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 RNASEH1O60930 286 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 KLF8O95600 359 aaPredicted RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 APOC2P02655 101 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 CCNCP24863 283 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 HOXA6P31267 233 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 SERPINH1P50454 418 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 PAPOLAP51003 745 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 SEC13P55735 322 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 CCDC15Q0P6D6 951 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 MMRN1Q13201 1228 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 XRCC4Q13426 336 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 GRM3Q14832 879 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 HNRNPA1L2Q32P51 320 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 TMEM215Q68D42 235 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 NCBP2-AS2Q69YL0 99 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 CPNE8Q86YQ8 564 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 SH2D3CQ8N5H7 860 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 PCDH20Q8N6Y1 951 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 ATP11CQ8NB49 1132 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 TXNDC5Q8NBS9 432 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 OR7D4Q8NG98 312 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 HMCESQ96FZ2 354 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 TSGA13Q96PP4 275 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 SLC39A8Q9C0K1 460 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 TMEM245Q9H330 911 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 HOMER3Q9NSC5 361 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 NDFIP2Q9NV92 336 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 KLHL11Q9NVR0 708 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 DLGAP2Q9P1A6 1054 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 IPO11Q9UI26 975 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 PYCARDQ9ULZ3 195 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 SCML1Q9UN30 329 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 ZKSCAN5Q9Y2L8 839 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 STON1Q9Y6Q2 735 aa17.88■□□□□ 0.45
CLSTN3-210ENST00000540931 CCDC163A0A0D9SF12 145 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 HACD1B0YJ81 288 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 KIF2AO00139 706 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 PRAMEF11O60813 436 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 DCNP07585 359 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 HOXB2P14652 356 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 PRLRP16471 622 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 CES1P23141 567 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 GARSP41250 739 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 MAPK8P45983 427 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 FOXK2Q01167 660 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 ZBTB16Q05516 673 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 RAD51Q06609 339 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 GALNT2Q10471 571 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 BYSLQ13895 437 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 CRY1Q16526 586 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 PTPRNQ16849 979 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 EGFLAMQ63HQ2 1017 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 NAIF1Q69YI7 327 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 ASCL5Q7RTU5 278 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 ALLCQ8N6M5 410 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 PQLC3Q8N755 202 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 PLD5Q8N7P1 536 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 TMEM105Q8N8V8 129 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 EZH1Q92800 747 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 HDAC11Q96DB2 347 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 LRIG1Q96JA1 1093 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 PSMB7Q99436 277 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 KLC2Q9H0B6 622 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 NOL6Q9H6R4 1146 aaKnown RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 SPATA6Q9NWH7 488 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 UBA2Q9UBT2 640 aaPredicted RBP17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 FBXO4Q9UKT5 387 aa17.87■□□□□ 0.45
CLSTN3-210ENST00000540931 CHD5Q8TDI0 1954 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 KCNK3O14649 394 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 ZMPSTE24O75844 475 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 NEBLO76041 1014 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 EPHX1P07099 455 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 PYGMP11217 842 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 TCP1P17987 556 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 NBL1P41271 181 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 GNG11P61952 73 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 SNRPD1P62314 119 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 MESP2Q0VG99 397 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 HNRNPDQ14103 355 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 ACCSLQ4AC99 568 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 RALGPS1Q5JS13 557 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 KAZNQ674X7 775 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 C1orf210Q8IVY1 113 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 ARHGAP12Q8IWW6 846 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 DTWD2Q8NBA8 298 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 OR52K2Q8NGK3 314 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 ALG3Q92685 438 aa17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 RBM12Q9NTZ6 932 aaKnown RBP17.86■□□□□ 0.45
CLSTN3-210ENST00000540931 CTAGE9A4FU28 777 aa17.85■□□□□ 0.45
CLSTN3-210ENST00000540931 ACVRL1P37023 503 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms