RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 PLK5Q496M5 336 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 USP39Q53GS9 565 aaKnown RBP16.09■□□□□ 0.17
RPAIN-206ENST00000539417 CEP68Q76N32 757 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 MMAAQ8IVH4 418 aaKnown RBP16.09■□□□□ 0.17
RPAIN-206ENST00000539417 CHST14Q8NCH0 376 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 PCDH19Q8TAB3 1148 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 FAM122AQ96E09 287 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 USP36Q9P275 1121 aaKnown RBP16.09■□□□□ 0.17
RPAIN-206ENST00000539417 SERGEFQ9UGK8 458 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 SARDHQ9UL12 918 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 ALG6Q9Y672 507 aa16.09■□□□□ 0.17
RPAIN-206ENST00000539417 PLXND1Q9Y4D7 1925 aa16.08■□□□□ 0.17
RPAIN-206ENST00000539417 LAMA1P25391 3075 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 A0A0A6YYK5 440 aaPredicted RBP16.08■□□□□ 0.16
RPAIN-206ENST00000539417 TARSL2A2RTX5 802 aaKnown RBP16.08■□□□□ 0.16
RPAIN-206ENST00000539417 C3orf70A6NLC5 250 aaPredicted RBP16.08■□□□□ 0.16
RPAIN-206ENST00000539417 PLK4O00444 970 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 PJA2O43164 708 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 CTSLP07711 333 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 C7P10643 843 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 CNR2P34972 360 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 MARCKSL1P49006 195 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 PAPOLAP51003 745 aaKnown RBP16.08■□□□□ 0.16
RPAIN-206ENST00000539417 TPMTP51580 245 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 GSDMDP57764 484 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 CCZ1BP86790 482 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 CCZ1P86791 482 aaPredicted RBP16.08■□□□□ 0.16
RPAIN-206ENST00000539417 KRT81Q14533 505 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 E2F5Q15329 346 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 C22orf39Q6P5X5 142 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 FAM124AQ86V42 546 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 PIAS4Q8N2W9 510 aaPredicted RBP16.08■□□□□ 0.16
RPAIN-206ENST00000539417 DCLK2Q8N568 766 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 OR2A12Q8NGT7 310 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 TPCN2Q8NHX9 752 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 PRCCQ92733 491 aaPredicted RBP16.08■□□□□ 0.16
RPAIN-206ENST00000539417 VOPP1Q96AW1 172 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 ITM2CQ9NQX7 267 aa16.08■□□□□ 0.16
RPAIN-206ENST00000539417 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 MID1O15344 667 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 LMNAP02545 664 aaKnown RBP16.07■□□□□ 0.16
RPAIN-206ENST00000539417 NNMTP40261 264 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 ARL4AP40617 200 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 NDST2P52849 883 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 YBEYP58557 167 aaPredicted RBP16.07■□□□□ 0.16
RPAIN-206ENST00000539417 POM121L1PQ3SYA9 428 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 ZNF354CQ86Y25 554 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 LRRC8AQ8IWT6 810 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 TMEFF1Q8IYR6 380 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 PQLC3Q8N755 202 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 KCTD6Q8NC69 237 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 LRRN4Q8WUT4 740 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 CALN1Q9BXU9 219 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 PDFQ9HBH1 243 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 ADGRG1Q9Y653 693 aa16.07■□□□□ 0.16
RPAIN-206ENST00000539417 MAP3K6O95382 1288 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 KDELR1P24390 212 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 GKP32189 559 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 PSMD8P48556 350 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 CYTH1Q15438 398 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 CST6Q15828 149 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 PARP15Q460N3 678 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 ANKRD20A8PQ5CZ79 823 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 ZNF776Q68DI1 518 aaPredicted RBP16.06■□□□□ 0.16
RPAIN-206ENST00000539417 NCBP2-AS2Q69YL0 99 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 RETSATQ6NUM9 610 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 DPY19L3Q6ZPD9 716 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 KIAA1328Q86T90 577 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 METTL3Q86U44 580 aaKnown RBP16.06■□□□□ 0.16
RPAIN-206ENST00000539417 ALYREFQ86V81 257 aaKnown RBP16.06■□□□□ 0.16
RPAIN-206ENST00000539417 AADATQ8N5Z0 425 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 KRT35Q92764 455 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 FAF2Q96CS3 445 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 ZC3H10Q96K80 434 aaKnown RBP16.06■□□□□ 0.16
RPAIN-206ENST00000539417 TM6SF2Q9BZW4 377 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 LCMT1Q9UIC8 334 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 SDK1Q7Z5N4 2213 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 NUMA1Q14980 2115 aa16.06■□□□□ 0.16
RPAIN-206ENST00000539417 THADAQ6YHU6 1953 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 GRID2IPA4D2P6 1211 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 BTNL10A8MVZ5 291 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 GOLGA6L6A8MZA4 724 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 DFFAO00273 331 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 ZBTB24O43167 697 aaPredicted RBP16.05■□□□□ 0.16
RPAIN-206ENST00000539417 SPOPO43791 374 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 MFSD11O43934 449 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 TMCC1O94876 653 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 IPO7O95373 1038 aaKnown RBP16.05■□□□□ 0.16
RPAIN-206ENST00000539417 KRT7P08729 469 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 ACSL1P33121 698 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 ETFBP38117 255 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 PTGER3P43115 390 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 MRE11P49959 708 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 ZNF135P52742 658 aaPredicted RBP16.05■□□□□ 0.16
RPAIN-206ENST00000539417 ELAVL3Q14576 367 aaKnown RBP16.05■□□□□ 0.16
RPAIN-206ENST00000539417 LLGL1Q15334 1064 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 CCDC6Q16204 474 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 FAM182AQ5T1J6 154 aa16.05■□□□□ 0.16
RPAIN-206ENST00000539417 ATXN7L2Q5T6C5 722 aaPredicted RBP16.05■□□□□ 0.16
RPAIN-206ENST00000539417 PMS2CLQ68D20 193 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms