RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 KCNK5O95279 499 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 IGHV4-34P06331 123 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 SYPP08247 313 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 KCNA4P22459 653 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 L1CAMP32004 1257 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 ACVRL1P37023 503 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 MAPKAPK2P49137 400 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 CLCN6P51797 869 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 ATXN3P54252 364 aaPredicted RBP15.13■□□□□ 0.01
USP28-204ENST00000537642 ARF5P84085 180 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 ZBED6P86452 979 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 ZNF252P-AS1Q0IIN9 211 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 GRIK2Q13002 908 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 EFHC2Q5JST6 749 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 KIAA0895LQ68EN5 471 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 DSG4Q86SJ6 1040 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 MINDY1Q8N5J2 469 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 OR2A12Q8NGT7 310 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 OR2T34Q8NGX1 318 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 PIP4K2CQ8TBX8 421 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 CPLX3Q8WVH0 158 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 SYN2Q92777 582 aaPredicted RBP15.13■□□□□ 0.01
USP28-204ENST00000537642 FAM131CQ96AQ9 280 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 ACE2Q9BYF1 805 aaPredicted RBP15.13■□□□□ 0.01
USP28-204ENST00000537642 TRIM7Q9C029 511 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 CNOT8Q9UFF9 292 aaKnown RBP15.13■□□□□ 0.01
USP28-204ENST00000537642 DNAI1Q9UI46 699 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 CAPN11Q9UMQ6 739 aa15.13■□□□□ 0.01
USP28-204ENST00000537642 DOCK9Q9BZ29 2069 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 TMEM191CA6NGB0 347 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 ZNF821O75541 412 aaPredicted RBP15.12■□□□□ 0.01
USP28-204ENST00000537642 GYPCP04921 128 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 CTSLP07711 333 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 PSMA2P25787 234 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 CD27P26842 260 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 ADPRHP54922 357 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 AIF1P55008 147 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 BNC1Q01954 994 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 SEMA3BQ13214 749 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 POM121L1PQ3SYA9 428 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 TDRD12Q587J7 1177 aaKnown RBP15.12■□□□□ 0.01
USP28-204ENST00000537642 FAM46CQ5VWP2 391 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 C22orf39Q6P5X5 142 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.12■□□□□ 0.01
USP28-204ENST00000537642 ARFGAP1Q8N6T3 406 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 ARHGEF2Q92974 986 aaKnown RBP15.12■□□□□ 0.01
USP28-204ENST00000537642 ZNF653Q96CK0 615 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 IQCDQ96DY2 449 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 XPO4Q9C0E2 1151 aaKnown RBP15.12■□□□□ 0.01
USP28-204ENST00000537642 ISCUQ9H1K1 167 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 TNKS2Q9H2K2 1166 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 TM9SF3Q9HD45 589 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 DNAAF2Q9NVR5 837 aaKnown RBP15.12■□□□□ 0.01
USP28-204ENST00000537642 ACTL7AQ9Y615 435 aa15.12■□□□□ 0.01
USP28-204ENST00000537642 LRRC72A6NJI9 287 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 C1QTNF3-AMACRE9PGA6 284 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 GIPC1O14908 333 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 OPHN1O60890 802 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 GJB3O75712 270 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 CD160O95971 181 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 ADRB1P08588 477 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 EPHB2P29323 1055 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 CHRNA3P32297 505 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 ETFBP38117 255 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 SERPINH1P50454 418 aaKnown RBP15.11■□□□□ 0.01
USP28-204ENST00000537642 SLC20A2Q08357 652 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 CNTN1Q12860 1018 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 PSAPL1Q6NUJ1 521 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 RETSATQ6NUM9 610 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 CHST14Q8NCH0 376 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 OR14C36Q8NHC7 312 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 ZDHHC5Q9C0B5 715 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 MAGEH1Q9H213 219 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 NOL6Q9H6R4 1146 aaKnown RBP15.11■□□□□ 0.01
USP28-204ENST00000537642 EBF2Q9HAK2 575 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 OSGEPQ9NPF4 335 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 GPATCH2LQ9NWQ4 482 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 BZW2Q9Y6E2 419 aaKnown RBP15.11■□□□□ 0.01
USP28-204ENST00000537642 TMEM131Q92545 1883 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 CABIN1Q9Y6J0 2220 aa15.11■□□□□ 0.01
USP28-204ENST00000537642 A0A1B0GVT2 93 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 A0A1W2PPC4 97 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 RNF103O00237 685 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 SLC7A4O43246 635 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 CREB3O43889 395 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 RAMP2O60895 175 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 SERPING1P05155 500 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 MYBL1P10243 752 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 DESP17661 470 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 CSRP1P21291 193 aaKnown RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 CSNK1EP49674 416 aaKnown RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 NOVA1P51513 510 aaKnown RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 CCR5P51681 352 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 AFF3P51826 1226 aaKnown RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 N4BP2L1Q5TBK1 243 aaPredicted RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 AGBL4Q5VU57 503 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 DPY19L3Q6ZPD9 716 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 PIP4P1Q86T03 277 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 RTL3Q8N8U3 475 aaKnown RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 DEFB124Q8NES8 71 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms