RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 SLC10A2Q12908 348 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 FLOT2Q14254 428 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SUZ12Q15022 739 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 CLVS2Q5SYC1 327 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PM20D1Q6GTS8 502 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 C11orf63Q6NUN7 778 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TATDN1Q6P1N9 297 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PGM2L1Q6PCE3 622 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TTC33Q6PID6 262 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 KYAT3Q6YP21 454 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 FKBP9P1Q75LS8 142 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SV2BQ7L1I2 683 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 HEATR3Q7Z4Q2 680 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PODNQ7Z5L7 613 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SNX32Q86XE0 403 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CCDC28AQ8IWP9 274 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ADGRG5Q8IZF4 528 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 BLIDQ8IZY5 108 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SIX6OS1Q8N1H7 587 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 FBXW8Q8N3Y1 598 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 FBXL6Q8N531 539 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 BANPQ8N9N5 519 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TRPM4Q8TD43 1214 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 LRRN4Q8WUT4 740 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 KCTD4Q8WVF5 259 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TRUB1Q8WWH5 349 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 ATL1Q8WXF7 558 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 KAT5Q92993 513 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NXPE3Q969Y0 559 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SH3YL1Q96HL8 342 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 METTL2AQ96IZ6 378 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 PNMA5Q96PV4 448 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PAFAH2Q99487 392 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 C7orf25Q9BPX7 421 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TUBB6Q9BUF5 446 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CHID1Q9BWS9 393 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PLA2G12BQ9BX93 195 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DGCR6LQ9BY27 220 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 RNF26Q9BY78 433 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZBTB3Q9H5J0 574 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SCPEP1Q9HB40 452 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NTN4Q9HB63 628 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TMEM39AQ9NV64 488 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TMEM260Q9NX78 707 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PLK2Q9NYY3 685 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DPP7Q9UHL4 492 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SLC24A2Q9UI40 661 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SERPINB13Q9UIV8 391 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PNMA8BQ9ULN7 279 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 AP3M1Q9Y2T2 418 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SPEF2Q9C093 1822 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 MAST2Q6P0Q8 1798 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TCRBV7S3A2A0A539 114 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CIB4A0PJX0 185 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 BTNL10A8MVZ5 291 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ASNA1O43681 348 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZBTB14O43829 449 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NUAK1O60285 661 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NRP2O60462 931 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 FKTNO75072 461 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CPNE3O75131 537 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZNF254O75437 659 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 FAM86B2P0C5J1 330 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZNF250P15622 560 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CD58P19256 250 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 PSMC2P35998 433 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 CASP3P42574 277 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 OR3A3P47888 321 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NUDT2P50583 147 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TUBA4AP68366 448 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 FKBP3Q00688 224 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 SMARCB1Q12824 385 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 COASYQ13057 564 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TRPC3Q13507 836 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 USP41Q3LFD5 358 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CRTC2Q53ET0 693 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 FNBP1LQ5T0N5 605 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ANKRD22Q5VYY1 191 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 MAP1SQ66K74 1059 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 DESI1Q6ICB0 168 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 RWDD4Q6NW29 188 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 BRICD5Q6PL45 260 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DPP8Q6V1X1 898 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 SMIM5Q71RC9 77 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SH3BP5LQ7L8J4 393 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TMPRSS9Q7Z410 1059 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 MAVSQ7Z434 540 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CYP2U1Q7Z449 544 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 MAPKAPK5Q8IW41 473 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 UBL4BQ8N7F7 174 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TTLQ8NG68 377 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CYGBQ8WWM9 190 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SYN2Q92777 582 aaPredicted RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 GIMAP5Q96F15 307 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ZNF560Q96MR9 790 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TSG101Q99816 390 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 USB1Q9BQ65 265 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 PSD2Q9BQI7 771 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 WDR83Q9BRX9 315 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms