RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	GALNT15	Q8N3T1	639 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	IQCF1	Q8N6M8	205 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	EXD3	Q8N9H8	876 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	CMAS	Q8NFW8	434 aa	Predicted RBP	3.03	□□□□□ -1.92
CD44-238	ENST00000534296	SCAMP5	Q8TAC9	235 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	FAM110D	Q8TAY7	271 aa	Predicted RBP	3.03	□□□□□ -1.92
CD44-238	ENST00000534296	OTUD7A	Q8TE49	926 aa	Predicted RBP	3.03	□□□□□ -1.92
CD44-238	ENST00000534296	ADAMTS15	Q8TE58	950 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	NOC3L	Q8WTT2	800 aa	Known RBP	3.03	□□□□□ -1.92
CD44-238	ENST00000534296	ASB5	Q8WWX0	329 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	TEFM	Q96QE5	360 aa	Known RBP	3.03	□□□□□ -1.92
CD44-238	ENST00000534296	HDHD5	Q9BXW7	423 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	SEZ6L	Q9BYH1	1024 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	DCLK3	Q9C098	648 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	B3GNT4	Q9C0J1	378 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	CLPB	Q9H078	707 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	MAGEH1	Q9H213	219 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	ZNF304	Q9HCX3	659 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	KIF17	Q9P2E2	1029 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	ZNF580	Q9UK33	172 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	PCDHA7	Q9UN72	937 aa		3.03	□□□□□ -1.92
CD44-238	ENST00000534296	SRPRB	Q9Y5M8	271 aa	Known RBP	3.03	□□□□□ -1.92
CD44-238	ENST00000534296	CACNA1I	Q9P0X4	2223 aa		3.03	□□□□□ -1.93
CD44-238	ENST00000534296	CNTNAP2	Q9UHC6	1331 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	TRBV5-7	A0A0A0MS05	114 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296		E7EVH7	732 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296		H0Y3Z8	333 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	EYA2	O00167	538 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	ASAP2	O43150	1006 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	SPRY3	O43610	288 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	KRT38	O76015	456 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	METTL18	O95568	372 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	NGFR	P08138	427 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	FGF2	P09038	288 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	HOXC6	P09630	235 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	FCGR2A	P12318	317 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	ENO3	P13929	434 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-238	ENST00000534296	CHN1	P15882	459 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	CHRNB2	P17787	502 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	PRKCH	P24723	683 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	YWHAQ	P27348	245 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	CST5	P28325	142 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-238	ENST00000534296	TYK2	P29597	1187 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	TNFSF8	P32971	234 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	RFC1	P35251	1148 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-238	ENST00000534296	NANOS2	P60321	138 aa	Known RBP	3.02	□□□□□ -1.93
CD44-238	ENST00000534296	ZXDB	P98169	803 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	PPFIA1	Q13136	1202 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	PDCL	Q13371	301 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	DCTN1	Q14203	1278 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	FSCB	Q5H9T9	825 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	DCAF12L2	Q5VW00	463 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	RUSC1-AS1	Q66K80	236 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	HEPHL1	Q6MZM0	1159 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	LIN54	Q6MZP7	749 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	BRSK2	Q8IWQ3	736 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	SCN4B	Q8IWT1	228 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	HORMAD2	Q8N7B1	307 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	ANKRD44	Q8N8A2	993 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	OR1N1	Q8NGS0	311 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	STT3B	Q8TCJ2	826 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	ELP5	Q8TE02	316 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	SLC35F5	Q8WV83	523 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	FAR1	Q8WVX9	515 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	OIT3	Q8WWZ8	545 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	THAP4	Q8WY91	577 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	NCSTN	Q92542	709 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	INPP5D	Q92835	1189 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	SDCCAG3	Q96C92	435 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	GFM1	Q96RP9	751 aa	Known RBP	3.02	□□□□□ -1.93
CD44-238	ENST00000534296	WDR77	Q9BQA1	342 aa	Predicted RBP	3.02	□□□□□ -1.93
CD44-238	ENST00000534296	ISCA1	Q9BUE6	129 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	DDX23	Q9BUQ8	820 aa	Known RBP	3.02	□□□□□ -1.93
CD44-238	ENST00000534296	PLAC1	Q9HBJ0	212 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296		Q9N2J8	555 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	G6PC2	Q9NQR9	355 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	TMEM248	Q9NWD8	314 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	ZDHHC7	Q9NXF8	308 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	KL	Q9UEF7	1012 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	FBXO40	Q9UH90	709 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	KCND3	Q9UK17	655 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	LZTS1	Q9Y250	596 aa		3.02	□□□□□ -1.93
CD44-238	ENST00000534296	EME2	A4GXA9	379 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-238	ENST00000534296	NPIPB13	A6NJU9	1138 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	NPIPB5	A8MRT5	1133 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	HMGB1P1	B2RPK0	211 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-238	ENST00000534296	NPIPB4	C9JG80	1138 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	STMND1	H3BQB6	276 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	PRSS2	P07478	247 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	DHRS4L1	P0CG22	281 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	UNG	P13051	313 aa	Predicted RBP	3.01	□□□□□ -1.93
CD44-238	ENST00000534296	AVPR1A	P37288	418 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	ARL4C	P56559	192 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	THOC5	Q13769	683 aa	Known RBP	3.01	□□□□□ -1.93
CD44-238	ENST00000534296	SMAD1	Q15797	465 aa	Known RBP	3.01	□□□□□ -1.93
CD44-238	ENST00000534296	ASIC2	Q16515	512 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	HLF	Q16534	295 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	MTFR2	Q6P444	385 aa		3.01	□□□□□ -1.93
CD44-238	ENST00000534296	KIAA1324	Q6UXG2	1013 aa	Known RBP	3.01	□□□□□ -1.93
CD44-238	ENST00000534296	CRELD2	Q6UXH1	353 aa	Predicted RBP	3.01	□□□□□ -1.93

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