RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PTPRN2Q92932 1015 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 ISG20Q96AZ6 181 aaKnown RBP14.78□□□□□ -0.04
CPSF1-206ENST00000531480 HES6Q96HZ4 224 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 RPL10LQ96L21 214 aaKnown RBP14.78□□□□□ -0.04
CPSF1-206ENST00000531480 CALN1Q9BXU9 219 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 CEP44Q9C0F1 390 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 FBRSQ9HAH7 460 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 POLMQ9NP87 494 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-206ENST00000531480 PRSS16Q9NQE7 514 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 SUN2Q9UH99 717 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 SLC25A13Q9UJS0 675 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 GUCA1BQ9UMX6 200 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 EFR3BQ9Y2G0 817 aa14.78□□□□□ -0.04
CPSF1-206ENST00000531480 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.78□□□□□ -0.04
CPSF1-206ENST00000531480 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.78□□□□□ -0.04
CPSF1-206ENST00000531480 EDDM13A0A1B0GTR0 161 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 ARHGAP42A6NI28 874 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 TTC34A8MYJ7 566 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 CBX4O00257 560 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 PRAMEF11O60813 436 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 ZRANB2O95218 330 aaKnown RBP eCLIP14.77□□□□□ -0.05
CPSF1-206ENST00000531480 APBB3O95704 486 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 KRT1P04264 644 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 EPHX1P07099 455 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 HLA-EP13747 358 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 GABRG2P18507 467 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 PTPN7P35236 360 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 WASP42768 502 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 NRLP54845 237 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 COPS2P61201 443 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 PPP2R5EQ16537 467 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 INO80DQ53TQ3 878 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-206ENST00000531480 C9orf64Q5T6V5 341 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 IL31Q6EBC2 164 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 MFSD7Q6UXD7 560 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 METTL3Q86U44 580 aaKnown RBP14.77□□□□□ -0.05
CPSF1-206ENST00000531480 TP53INP2Q8IXH6 220 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 PLPP6Q8IY26 295 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 PLD5Q8N7P1 536 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 CASKIN2Q8WXE0 1202 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 ALG3Q92685 438 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 CELF6Q96J87 481 aaKnown RBP14.77□□□□□ -0.05
CPSF1-206ENST00000531480 SPON2Q9BUD6 331 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 AMFRQ9UKV5 643 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 HPCAL4Q9UM19 191 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 RAD54BQ9Y620 910 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 VPS13AQ96RL7 3174 aa14.77□□□□□ -0.05
CPSF1-206ENST00000531480 ESPNB1AK53 854 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 KIF2AO00139 706 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 DDX3YO15523 660 aaKnown RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 SMAD6O43541 496 aaKnown RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 LILRB5O75023 590 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 PEX11BO96011 259 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 NNMTP40261 264 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 PAPOLAP51003 745 aaKnown RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 CSTF1Q05048 431 aaKnown RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 GALNT2Q10471 571 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 STARD3Q14849 445 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 DLG2Q15700 870 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 TFDP3Q5H9I0 405 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 TSSK4Q6SA08 328 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 LINGO4Q6UY18 593 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 SPOCD1Q6ZMY3 1216 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 PEX26Q7Z412 305 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 WDR5BQ86VZ2 330 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 MDGA1Q8NFP4 955 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 TSTD1Q8NFU3 115 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 OR2T3Q8NH03 318 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 FATE1Q969F0 183 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 RBM41Q96IZ5 413 aaKnown RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 MRGPRX1Q96LB2 322 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 HHIPQ96QV1 700 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 MKRN2Q9H000 416 aaKnown RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 RSPH9Q9H1X1 276 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-206ENST00000531480 LZTFL1Q9NQ48 299 aa14.76□□□□□ -0.05
CPSF1-206ENST00000531480 SHROOM3Q8TF72 1996 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 hCG_1818297A0A087WSY0 165 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 TCRBV21S2A2A0A5A6 115 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 K7ERQ8 282 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 ALOX15BO15296 676 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 MFSD11O43934 449 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 SYNCRIPO60506 623 aaKnown RBP14.75□□□□□ -0.05
CPSF1-206ENST00000531480 MAFKO60675 156 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 SIN3BO75182 1162 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 ALDH1A2O94788 518 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 ZFXP17010 805 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-206ENST00000531480 NDUFV2P19404 249 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 NUMBP49757 651 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 RWDD2BP57060 319 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 IL10RBQ08334 325 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 DMWDQ09019 674 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 SLC10A2Q12908 348 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-206ENST00000531480 MEI1Q5TIA1 1274 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 C22orf39Q6P5X5 142 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 LONP2Q86WA8 852 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 PCDH20Q8N6Y1 951 aaKnown RBP14.75□□□□□ -0.05
CPSF1-206ENST00000531480 ZNF366Q8N895 744 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 TRIM58Q8NG06 486 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 VOPP1Q96AW1 172 aa14.75□□□□□ -0.05
CPSF1-206ENST00000531480 RNF25Q96BH1 459 aaPredicted RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms