RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 A0A1B0GTW7 788 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 A0A1B0GVT2 93 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 A0A1W2PQJ5 194 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 KCNK3O14649 394 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 BCAT2O15382 392 aaPredicted RBP10.9□□□□□ -0.66
CD44-227ENST00000528086 RNASEH2AO75792 299 aaKnown RBP10.9□□□□□ -0.66
CD44-227ENST00000528086 SERPINC1P01008 464 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 DNTTP04053 509 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 GZMAP12544 262 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 RHOQP17081 205 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 GOT1P17174 413 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 C5AR1P21730 350 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 IL1R2P27930 398 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 PMLP29590 882 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 OR1E1P30953 314 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 CSNK1EP49674 416 aaKnown RBP10.9□□□□□ -0.66
CD44-227ENST00000528086 OXCT1P55809 520 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 UBASH3AP57075 661 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 FOXK2Q01167 660 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 CNTN1Q12860 1018 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 UAP1L1Q3KQV9 507 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 FILIP1LQ4L180 1135 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 PIP5KL1Q5T9C9 394 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 KIAA0895LQ68EN5 471 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 TXNRD3NBQ6F5E7 133 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 PSAPL1Q6NUJ1 521 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 LRRC31Q6UY01 552 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 ZNF783Q6ZMS7 281 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 CPNE8Q86YQ8 564 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 TP53INP2Q8IXH6 220 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 DEFB124Q8NES8 71 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 CEP76Q8TAP6 659 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 VCPIP1Q96JH7 1222 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 NUSAP1Q9BXS6 441 aaKnown RBP10.9□□□□□ -0.66
CD44-227ENST00000528086 XPO4Q9C0E2 1151 aaKnown RBP10.9□□□□□ -0.66
CD44-227ENST00000528086 MIR1-1HGQ9H1L0 117 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 DNAI1Q9UI46 699 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 CAPN11Q9UMQ6 739 aa10.9□□□□□ -0.66
CD44-227ENST00000528086 FNDC3AQ9Y2H6 1198 aaKnown RBP10.9□□□□□ -0.66
CD44-227ENST00000528086 A0A087X0T9 212 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 A0A1W2PR77 199 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 MEI4A8MW99 385 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 UPK3BL1B0FP48 263 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 UPK3BL2E5RIL1 263 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 CBX4O00257 560 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SPINT1O43278 529 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 LATO43561 262 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 FSBPO95073 299 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 IL1BP01584 269 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 FAM228BP0C875 321 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 CD27P26842 260 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 L1CAMP32004 1257 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 GKP32189 559 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SERPINH1P50454 418 aaKnown RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 GFPT1Q06210 699 aaPredicted RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 KLHL30Q0D2K2 578 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SHBQ15464 509 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 KIF19Q2TAC6 998 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 TTC31Q49AM3 519 aaPredicted RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 ACCSLQ4AC99 568 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 WDR45BQ5MNZ6 344 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SYCP2LQ5T4T6 812 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 C6orf118Q5T5N4 469 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 IL31Q6EBC2 164 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 C22orf39Q6P5X5 142 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 LEKR1Q6ZMV7 388 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 DPY19L3Q6ZPD9 716 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 TMC6Q7Z403 805 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SLFN11Q7Z7L1 901 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 CCDC117Q8IWD4 279 aaPredicted RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 PIP4K2CQ8TBX8 421 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SYN2Q92777 582 aaPredicted RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 ARHGEF26Q96DR7 871 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 NSMCE3Q96MG7 304 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SLC6A18Q96N87 628 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SPON2Q9BUD6 331 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 GTPBP2Q9BX10 602 aaKnown RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 OSGEPQ9NPF4 335 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SLC25A13Q9UJS0 675 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 FZD4Q9ULV1 537 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SCML1Q9UN30 329 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 FCF1Q9Y324 198 aaKnown RBP10.89□□□□□ -0.67
CD44-227ENST00000528086 PAXBP1Q9Y5B6 917 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 SNX11Q9Y5W9 270 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 CEP295Q9C0D2 2601 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 PLXNB3Q9ULL4 1909 aa10.89□□□□□ -0.67
CD44-227ENST00000528086 PTPRBP23467 1997 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ANKRD36A6QL64 1941 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 A0A1W2PPC4 97 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 FAM47DPA6NHR8 397 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 WASH4PA8MWX3 477 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ALOX15BO15296 676 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 PLRG1O43660 514 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 CBFA2T3O75081 653 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 LRCH4O75427 683 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 ADH1BP00325 375 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 CSRP1P21291 193 aaKnown RBP10.88□□□□□ -0.67
CD44-227ENST00000528086 MIPP30301 263 aa10.88□□□□□ -0.67
CD44-227ENST00000528086 CHRNA3P32297 505 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms