RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SULT6B1Q6IMI4 303 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 STYK1Q6J9G0 422 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ZNF544Q6NX49 715 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 XKRXQ6PP77 449 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 BNC2Q6ZN30 1099 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 NIPA1Q7RTP0 329 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 LIMS2Q7Z4I7 341 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PRPF39Q86UA1 669 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 LRRTM3Q86VH5 581 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FBXO11Q86XK2 927 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CAMK1DQ8IU85 385 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 RIOX2Q8IUF8 465 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TPH2Q8IWU9 490 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CDH26Q8IXH8 852 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ADGRG5Q8IZF4 528 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PARP8Q8N3A8 854 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FBXW8Q8N3Y1 598 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FIBCD1Q8N539 461 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PRELID2Q8N945 189 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 C7orf57Q8NEG2 295 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CDC26Q8NHZ8 85 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FANK1Q8TC84 345 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FNIP1Q8TF40 1166 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 GRK7Q8WTQ7 553 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 RAB2BQ8WUD1 216 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TGFBRAP1Q8WUH2 860 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 SLC7A3Q8WY07 619 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FIG4Q92562 907 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PIK3R3Q92569 461 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 STAMQ92783 540 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TANKQ92844 425 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 SH3KBP1Q96B97 665 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 EDC3Q96F86 508 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 ZNF597Q96LX8 424 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 WRNIP1Q96S55 665 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CSRNP1Q96S65 589 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FAM129BQ96TA1 746 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 SERPINI1Q99574 410 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ZKSCAN3Q9BRR0 538 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ZSCAN5AQ9BUG6 496 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CCDC106Q9BWC9 280 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CHID1Q9BWS9 393 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 LSM14BQ9BX40 385 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 NPLQ9BXD5 320 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 TEX13BQ9BXU2 312 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ANKRD60Q9BZ19 345 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FAM96AQ9H5X1 160 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 NARFLQ9H6Q4 476 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 NANOGQ9H9S0 305 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ERVK-5Q9HDB9 667 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 AKIP1Q9NQ31 210 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ANLNQ9NQW6 1124 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 FBXO28Q9NVF7 368 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 UCKL1Q9NWZ5 548 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PPP1R14DQ9NXH3 145 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 PPARGC1AQ9UBK2 798 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 FETUBQ9UGM5 382 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ZC3H7BQ9UGR2 993 aaKnown RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 ADAMTS1Q9UHI8 967 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 RIMS3Q9UJD0 308 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ZNF229Q9UJW7 825 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 STOML2Q9UJZ1 356 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CDC14AQ9UNH5 594 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 POMPQ9Y244 141 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 RNF11Q9Y3C5 154 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TBX22Q9Y458 520 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 CSNK1G3Q9Y6M4 447 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 ASTN2O75129 1339 aaPredicted RBP5.92□□□□□ -1.46
CD44-225ENST00000527326 IGSF1Q8N6C5 1336 aa5.92□□□□□ -1.46
CD44-225ENST00000527326 TRAV6A0A075B6T7 132 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 MYOCOSA0A1B0GUC4 107 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 PCP4L1A6NKN8 68 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 CENPXA8MT69 81 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 H0Y858 1186 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 TOR1AO14656 332 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 SCAMP3O14828 347 aaKnown RBP5.91□□□□□ -1.46
CD44-225ENST00000527326 DAB1O75553 588 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 CCNKO75909 580 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 TMEM253P0C7T8 217 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 TRAPPC2P0DI81 140 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 TRAPPC2BP0DI82 140 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 CETPP11597 493 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 ZNF3P17036 446 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 ATF7P17544 494 aaPredicted RBP5.91□□□□□ -1.46
CD44-225ENST00000527326 CD247P20963 164 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 PIK3R1P27986 724 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 GABRB3P28472 473 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 AXLP30530 894 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 RPA3P35244 121 aaPredicted RBP5.91□□□□□ -1.46
CD44-225ENST00000527326 NPTX2P47972 431 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 SERPINB10P48595 397 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 HARS2P49590 506 aaKnown RBP5.91□□□□□ -1.46
CD44-225ENST00000527326 PRIM2P49643 509 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 COPAP53621 1224 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 HADHBP55084 474 aaKnown RBP5.91□□□□□ -1.46
CD44-225ENST00000527326 AP1S2P56377 157 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 CABP4P57796 275 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 VBP1P61758 197 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 CDKL1Q00532 357 aa5.91□□□□□ -1.46
CD44-225ENST00000527326 TNFAIP2Q03169 654 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms