RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 SNX10Q9Y5X0 201 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 CAPN6Q9Y6Q1 641 aa20.66■□□□□ 0.9
USP53-208ENST00000514305 RHOCP08134 193 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 TCF4P15884 667 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 KDELR1P24390 212 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 BYSLQ13895 437 aaKnown RBP20.65■□□□□ 0.9
USP53-208ENST00000514305 RPS6KA1Q15418 735 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 CA9Q16790 459 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 TCEAL6Q6IPX3 200 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 CYP2U1Q7Z449 544 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 ANKS1BQ7Z6G8 1248 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 AHI1Q8N157 1196 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 RTL3Q8N8U3 475 aaKnown RBP20.65■□□□□ 0.9
USP53-208ENST00000514305 TERB1Q8NA31 727 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 HMGB4Q8WW32 186 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 TCEAL3Q969E4 200 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 CNTNAP3BQ96NU0 1288 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 EDEM2Q9BV94 578 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 CNTNAP3Q9BZ76 1288 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 MPP6Q9NZW5 540 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 JRKLQ9Y4A0 524 aa20.65■□□□□ 0.9
USP53-208ENST00000514305 TCRBV21S2A2A0A5A6 115 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 ILVBLA1L0T0 632 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 FAM72CH0Y354 149 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 GOT1P17174 413 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 BCKDHBP21953 392 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 DHPSP49366 369 aaPredicted RBP20.64■□□□□ 0.89
USP53-208ENST00000514305 SGSHP51688 502 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 YBEYP58557 167 aaPredicted RBP20.64■□□□□ 0.89
USP53-208ENST00000514305 SULT2A1Q06520 285 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 TFDP2Q14188 446 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 EIF4HQ15056 248 aaKnown RBP20.64■□□□□ 0.89
USP53-208ENST00000514305 FAM72AQ5TYM5 149 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 TXNRD3NBQ6F5E7 133 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 FAM72DQ6L9T8 149 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 LPCAT2Q7L5N7 544 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 FAM72BQ86X60 149 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 CCDC50Q8IVM0 306 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 GOLPH3Q9H4A6 298 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 ZDHHC4Q9NPG8 344 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 CWC15Q9P013 229 aaKnown RBP20.64■□□□□ 0.89
USP53-208ENST00000514305 HPCAL4Q9UM19 191 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 TBC1D30Q9Y2I9 924 aa20.64■□□□□ 0.89
USP53-208ENST00000514305 CEP192Q8TEP8 1941 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 KHNYNO15037 678 aaKnown RBP20.63■□□□□ 0.89
USP53-208ENST00000514305 FTCDO95954 541 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 ATP5BP06576 529 aaKnown RBP20.63■□□□□ 0.89
USP53-208ENST00000514305 PABPC1P11940 636 aaKnown RBP20.63■□□□□ 0.89
USP53-208ENST00000514305 HNRNPLP14866 589 aaKnown RBP eCLIP20.63■□□□□ 0.89
USP53-208ENST00000514305 ERCC2P18074 760 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 P2RY2P41231 377 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 DPYSL3Q14195 570 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 ATP13A4Q4VNC1 1196 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 ALFQ53S48 1182 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 ZNF569Q5MCW4 686 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 TMCO3Q6UWJ1 677 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 BZW1Q7L1Q6 419 aaKnown RBP20.63■□□□□ 0.89
USP53-208ENST00000514305 TFAP2DQ7Z6R9 452 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.63■□□□□ 0.89
USP53-208ENST00000514305 CSPG4P5Q96PW8 444 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 MUC3BQ9H195 1237 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 MAGEH1Q9H213 219 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 GGA2Q9UJY4 613 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 LAMA1P25391 3075 aa20.63■□□□□ 0.89
USP53-208ENST00000514305 NPC1O15118 1278 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 ZBTB24O43167 697 aaPredicted RBP20.62■□□□□ 0.89
USP53-208ENST00000514305 RAMP2O60895 175 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 ADAM23O75077 832 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 CNTN5O94779 1100 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 CISD3P0C7P0 127 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 POLR2EP19388 210 aaKnown RBP20.62■□□□□ 0.89
USP53-208ENST00000514305 ARSEP51690 589 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 NDST2P52849 883 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 ANKRD20A8PQ5CZ79 823 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 TFDP3Q5H9I0 405 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 MEI1Q5TIA1 1274 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 SDE2Q6IQ49 451 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 NLRP14Q86W24 1093 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 RLN3Q8WXF3 142 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 HES6Q96HZ4 224 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 ABCB8Q9NUT2 735 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 EFR3BQ9Y2G0 817 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 ZKSCAN5Q9Y2L8 839 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 PCDHGA4Q9Y5G9 962 aa20.62■□□□□ 0.89
USP53-208ENST00000514305 TNRC6BQ9UPQ9 1833 aaKnown RBP20.62■□□□□ 0.89
USP53-208ENST00000514305 LNP1A1A4G5 178 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 TM4SF5O14894 197 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 ASLP04424 464 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 HOXB2P14652 356 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 NTSR1P30989 418 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 NNMTP40261 264 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 PLK1P53350 603 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 POLD3Q15054 466 aaPredicted RBP20.61■□□□□ 0.89
USP53-208ENST00000514305 PPP2R5EQ16537 467 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 PARP15Q460N3 678 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 SEL1L2Q5TEA6 688 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 RNF219Q5W0B1 726 aaPredicted RBP20.61■□□□□ 0.89
USP53-208ENST00000514305 CIR1Q86X95 450 aaPredicted RBP20.61■□□□□ 0.89
USP53-208ENST00000514305 CPNE8Q86YQ8 564 aa20.61■□□□□ 0.89
USP53-208ENST00000514305 LRRC49Q8IUZ0 686 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms