RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 LOXL4Q96JB6 756 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 MAK16Q9BXY0 300 aaKnown RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 MUC3BQ9H195 1237 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 FBRSL1Q9HCM7 1045 aaKnown RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 ZNF212Q9UDV6 495 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 TBC1D30Q9Y2I9 924 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 MSRB2Q9Y3D2 182 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 ILVBLA1L0T0 632 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 ZNF487B1APH4 448 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 PRRT4C9JH25 899 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 GIPC1O14908 333 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 DCLK1O15075 740 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 DDX3YO15523 660 aaKnown RBP10.27□□□□□ -0.77
NUP54-203ENST00000504173 RAMP2O60895 175 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 IL4RP24394 825 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 MZF1P28698 734 aaPredicted RBP10.27□□□□□ -0.77
NUP54-203ENST00000504173 SERPINB6P35237 376 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 ETFBP38117 255 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 NUMBP49757 651 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 CCR3P51677 355 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 RWDD2BP57060 319 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 GNA12Q03113 381 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 SLC12A1Q13621 1099 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 LRRC32Q14392 662 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 DMC1Q14565 340 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 RPS6KA1Q15418 735 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 PLEKHG6Q3KR16 790 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 FUT11Q495W5 492 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 FBXO43Q4G163 708 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 PITRM1Q5JRX3 1037 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 DGKKQ5KSL6 1271 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 MEI1Q5TIA1 1274 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 MBLAC2Q68D91 279 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 TMCO3Q6UWJ1 677 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 MFSD7Q6UXD7 560 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 ZNF783Q6ZMS7 281 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 SPOCD1Q6ZMY3 1216 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 VSIG1Q86XK7 387 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 ZNF354CQ86Y25 554 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 RFX6Q8HWS3 928 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 SFTPA1Q8IWL2 248 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 ZNF687Q8N1G0 1237 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 SLC35F6Q8N357 371 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 FAM160A2Q8N612 972 aaPredicted RBP10.27□□□□□ -0.77
NUP54-203ENST00000504173 OR52K2Q8NGK3 314 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 EXD1Q8NHP7 514 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 UCMAQ8WVF2 138 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 ALG3Q92685 438 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 FAF2Q96CS3 445 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 HES6Q96HZ4 224 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 LMLNQ96KR4 655 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 CIPCQ9C0C6 399 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 NDFIP2Q9NV92 336 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 VPS28Q9UK41 221 aa10.27□□□□□ -0.77
NUP54-203ENST00000504173 A0A0A0MRY4 1105 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 A0A0D9SEW6 157 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 C3orf70A6NLC5 250 aaPredicted RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 K7EQS6 105 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 APOL1O14791 398 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 TIMM44O43615 452 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 ATP5BP06576 529 aaKnown RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 CHRNB1P11230 501 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 POLR2EP19388 210 aaKnown RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 CETN2P41208 172 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 CDKN2BP42772 138 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 TNFRSF4P43489 277 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 PEX5P50542 639 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 NDST2P52849 883 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 SEC13P55735 322 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 COPS2P61201 443 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 CCINQ13939 588 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 POLD3Q15054 466 aaPredicted RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 EIF4HQ15056 248 aaKnown RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 LLGL1Q15334 1064 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 PPP2R5EQ16537 467 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 COL28A1Q2UY09 1125 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 PARP15Q460N3 678 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 PLA2G2CQ5R387 149 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 KAZNQ674X7 775 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 TMEM215Q68D42 235 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 C19orf48Q6RUI8 117 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 KIAA0907Q7Z7F0 614 aaPredicted RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 ADIPOR2Q86V24 386 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 APCDD1Q8J025 514 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 UMODL1-AS1Q8N2C9 162 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 C17orf53Q8N3J3 647 aaPredicted RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 LZTR1Q8N653 840 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 NPWQ8N729 165 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 DCAF4L2Q8NA75 395 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 OR7D4Q8NG98 312 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 PCDH19Q8TAB3 1148 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 CCDC26Q8TAB7 109 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 EZH1Q92800 747 aaPredicted RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 ARHGEF2Q92974 986 aaKnown RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 CELF6Q96J87 481 aaKnown RBP10.26□□□□□ -0.77
NUP54-203ENST00000504173 RNF157Q96PX1 679 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 FEM1AQ9BSK4 669 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 SPON2Q9BUD6 331 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 MAGEH1Q9H213 219 aa10.26□□□□□ -0.77
NUP54-203ENST00000504173 LMAN1LQ9HAT1 526 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms