RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MYOCQ99972 504 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 MRPL9Q9BYD2 267 aaKnown RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 PLA2G2FQ9BZM2 168 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 RWDD1Q9H446 243 aaPredicted RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 GALNT9Q9HCQ5 603 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 DIAPH3Q9NSV4 1193 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 TBCCD1Q9NVR7 557 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 FBXO34Q9NWN3 711 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 SEC63Q9UGP8 760 aaKnown RBP4.34□□□□□ -1.71
USP54-217ENST00000498213 TUBE1Q9UJT0 475 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 NFASCO94856 1347 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 IGSF9BQ9UPX0 1349 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 DNHD1Q96M86 4753 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 DENND4AQ7Z401 1863 aa4.34□□□□□ -1.71
USP54-217ENST00000498213 F5P12259 2224 aa4.34□□□□□ -1.72
USP54-217ENST00000498213 USP9YO00507 2555 aaPredicted RBP4.34□□□□□ -1.72
USP54-217ENST00000498213 MYH7BA7E2Y1 1941 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 GREB1Q4ZG55 1949 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 TCRBV7S2A1N4TA0A589 114 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 DENND3A2RUS2 1198 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 CDHR4A6H8M9 788 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 KLHL33A6NCF5 533 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 MARCH11A6NNE9 402 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 ZAR1LA6NP61 321 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 MAGEB2O15479 319 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 EXTL3O43909 919 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 NDUFS2O75306 463 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 CTSAP10619 480 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 CHRNB1P11230 501 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 GCSHP23434 173 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SLC6A2P23975 617 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 ADSSP30520 456 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 CXCR5P32302 372 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 LIFRP42702 1097 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SLC6A9P48067 706 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 GUCY2FP51841 1108 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 POLGP54098 1239 aaPredicted RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 CXADRP78310 365 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SETQ01105 290 aaPredicted RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 PPFIA1Q13136 1202 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 MPP3Q13368 585 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 MTM1Q13496 603 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 GRM4Q14833 912 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 VPS53Q5VIR6 699 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 METRNLQ641Q3 311 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SMAP1Q8IYB5 467 aaPredicted RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 CMASQ8NFW8 434 aaPredicted RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 NCOA7Q8NI08 942 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 CTCFLQ8NI51 663 aaPredicted RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 TBC1D15Q8TC07 691 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 ADAMTS14Q8WXS8 1223 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 TBC1D5Q92609 795 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 FGF13Q92913 245 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 RRP36Q96EU6 259 aaKnown RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 TMX3Q96JJ7 454 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SEC62Q99442 399 aaKnown RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 TMEM117Q9H0C3 514 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 C11orf54Q9H0W9 315 aaPredicted RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 CASS4Q9NQ75 786 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 FSCN3Q9NQT6 498 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 CHST12Q9NRB3 414 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 TMEM161AQ9NX61 479 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 COL20A1Q9P218 1284 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SLC23A1Q9UHI7 598 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 USP25Q9UHP3 1055 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 KCNE5Q9UJ90 142 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 CDH7Q9ULB5 785 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 DMTF1Q9Y222 760 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 GINS2Q9Y248 185 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SSX2IPQ9Y2D8 614 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 SIK3Q9Y2K2 1263 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 AHCTF1Q8WYP5 2266 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 ASCC3Q8N3C0 2202 aaKnown RBP4.33□□□□□ -1.72
USP54-217ENST00000498213 PCNX2A6NKB5 2137 aa4.33□□□□□ -1.72
USP54-217ENST00000498213 IGKV6D-21A0A0A0MT36 114 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 A0A0D9SFI3 127 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 FAM149AA5PLN7 773 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 HBP1O60381 514 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 HAUS5O94927 633 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 FTH1P19P0C7X4 201 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 CCNE1P24864 410 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 TMOD1P28289 359 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 TCF7P36402 384 aaPredicted RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 IL12RB1P42701 662 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 SEC24CP53992 1094 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 IGBP1P78318 339 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 SP2Q02086 613 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 SP4Q02446 784 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 COL10A1Q03692 680 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 SEMA3BQ13214 749 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 MTMR1Q13613 665 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 TRIP6Q15654 476 aaKnown RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 ELF2Q15723 593 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 ZNF484Q5JVG2 852 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 ANKRD45Q5TZF3 282 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 FAM160B1Q5W0V3 765 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 OLFML1Q6UWY5 402 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 MTSS1LQ765P7 747 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 RTL10Q7L3V2 364 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 GRASPQ7Z6J2 395 aaPredicted RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms