RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZSCAN5CA6NGD5 496 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SMAD6O43541 496 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 IGLV3-19P01714 112 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 KRT7P08729 469 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TPMTP51580 245 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 HADHBP55084 474 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SERINC3Q13530 473 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CST6Q15828 149 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TTC31Q49AM3 519 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ATP13A4Q4VNC1 1196 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 LPCAT2Q7L5N7 544 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MMAAQ8IVH4 418 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ACRBPQ8NEB7 543 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 FAM71BQ8TC56 605 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TSC1Q92574 1164 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 RUBCNQ92622 972 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CELF6Q96J87 481 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 LOXL4Q96JB6 756 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 HINFPQ9BQA5 517 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CEP44Q9C0F1 390 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 GRPEL1Q9HAV7 217 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 RCOR3Q9P2K3 495 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SCML1Q9UN30 329 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TFR2Q9UP52 801 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 REXO2Q9Y3B8 237 aaKnown RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 FARP1Q9Y4F1 1045 aaPredicted RBP16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ACTL7AQ9Y615 435 aa16.62■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 GOLGA6L3A6NEY3 463 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ARHGAP42A6NI28 874 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ALOX15BO15296 676 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 BNIP3LO60238 219 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 EPN2O95208 641 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CD160O95971 181 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ADH1BP00325 375 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 RETP07949 1114 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CD6P30203 668 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 OXTRP30559 389 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SLC1A1P43005 524 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 PSMD8P48556 350 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ARSEP51690 589 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 RPL6Q02878 288 aaKnown RBP16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 AFMIDQ63HM1 303 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 DSG4Q86SJ6 1040 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ARHGAP12Q8IWW6 846 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 LZTR1Q8N653 840 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 PCDH20Q8N6Y1 951 aaKnown RBP16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 NPWQ8N729 165 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 KCTD6Q8NC69 237 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SLC39A8Q9C0K1 460 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 KLC2Q9H0B6 622 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TNKS2Q9H2K2 1166 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 PABPC3Q9H361 631 aaKnown RBP16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 KLHL11Q9NVR0 708 aa16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 FCF1Q9Y324 198 aaKnown RBP16.61■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MCF2LO15068 1137 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MID1O15344 667 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 BUB1O43683 1085 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 NDUFS2O75306 463 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 IL1BP01584 269 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CD48P09326 243 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 AMPD1P23109 780 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 RECQLP46063 649 aaPredicted RBP16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 VAV2P52735 878 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SFSWAPQ12872 951 aaKnown RBP16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 DPYSL3Q14195 570 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 PDK2Q15119 407 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SPDYCQ5MJ68 293 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ZFYVE27Q5T4F4 411 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TMCO3Q6UWJ1 677 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 LEKR1Q6ZMV7 388 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MAP7D3Q8IWC1 876 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TMEFF1Q8IYR6 380 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 OR2A12Q8NGT7 310 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 TOE1Q96GM8 510 aaKnown RBP16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 ZNF670Q9BS34 389 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 CALN1Q9BXU9 219 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 WSB2Q9NYS7 404 aaPredicted RBP16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MFHAS1Q9Y4C4 1052 aa16.6■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MYO15AQ9UKN7 3530 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 RCCD1A6NED2 376 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 BTNL10A8MVZ5 291 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 C1QTNF3-AMACRE9PGA6 284 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 DFFAO00273 331 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SPOPO43791 374 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 BUB1BO60566 1050 aaPredicted RBP16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 C5AR1P21730 350 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 COMTP21964 271 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 HOXD11P31277 338 aaPredicted RBP16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 SLC8A1P32418 973 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 DHPSP49366 369 aaPredicted RBP16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 PAPOLAP51003 745 aaKnown RBP16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 MMRN1Q13201 1228 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 LRRC38Q5VT99 294 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 FAM46CQ5VWP2 391 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 USP30Q70CQ3 517 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 KIAA1328Q86T90 577 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 FAM124AQ86V42 546 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 NETO2Q8NC67 525 aa16.59■□□□□ 0.25
MSH5-SAPCD1-206ENST00000491552 GANCQ8TET4 914 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms