RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	RTN2	O75298	545 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ATXN1L	P0C7T5	689 aa	Known RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	EPX	P11678	715 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	GZMA	P12544	262 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CHRNB2	P17787	502 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CD6	P30203	668 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	HNRNPH3	P31942	346 aa	Known RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	EIF4A3	P38919	411 aa	Known RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	MATK	P42679	507 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	KIF11	P52732	1056 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CDK17	Q00537	523 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	FMO1	Q01740	532 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CYP4F3	Q08477	520 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ADIG	Q0VDE8	80 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CLEC16A	Q2KHT3	1053 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	FUT11	Q495W5	492 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ZNF468	Q5VIY5	522 aa	Predicted RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	SNX30	Q5VWJ9	437 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	NAA35	Q5VZE5	725 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	HTR3D	Q70Z44	454 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	RSRC2	Q7L4I2	434 aa	Known RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CCDC186	Q7Z3E2	898 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ZNF571	Q7Z3V5	609 aa	Predicted RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	TMEM110	Q86TL2	294 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	CCDC170	Q8IYT3	715 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	TXLNB	Q8N3L3	684 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	C1orf131	Q8NDD1	294 aa	Known RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ZMIZ2	Q8NF64	920 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	SLC30A5	Q8TAD4	765 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	SLC20A1	Q8WUM9	679 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	IRGQ	Q8WZA9	623 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	FAM149B1	Q96BN6	582 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	TRIM11	Q96F44	468 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	VCPIP1	Q96JH7	1222 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	BAG1	Q99933	345 aa	Predicted RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ZSWIM1	Q9BR11	485 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ULBP1	Q9BZM6	244 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	TM7SF3	Q9NS93	570 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	ABCC13	Q9NSE7	274 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	WSB2	Q9NYS7	404 aa	Predicted RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	WDR35	Q9P2L0	1181 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	NOCT	Q9UK39	431 aa	Known RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	LSM7	Q9UK45	103 aa	Known RBP	9.04	□□□□□ -0.96
USP4-213	ENST00000488520	SCML2	Q9UQR0	700 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	STON1	Q9Y6Q2	735 aa		9.04	□□□□□ -0.96
USP4-213	ENST00000488520	PTPRQ	Q9UMZ3	2332 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	TRABD2B	A6NFA1	517 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	TULP2	O00295	520 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	BCAT2	O15382	392 aa	Predicted RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	GREM1	O60565	184 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	FTL	P02792	175 aa	Predicted RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	CYP1A1	P04798	512 aa	Predicted RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	CISD3	P0C7P0	127 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	ZDHHC11B	P0C7U3	371 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	ATP5C1	P36542	298 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	TUB	P50607	506 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	RNASE9	P60153	205 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	YWHAG	P61981	247 aa	Known RBP eCLIP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	YWHAZ	P63104	245 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	BNC1	Q01954	994 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	SLC6A3	Q01959	620 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	GOLGA8F	Q08AF8	430 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	GOLGA8DP	Q0D2H9	430 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	SFSWAP	Q12872	951 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	PDCL	Q13371	301 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	ELOA	Q14241	798 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	STARD3	Q14849	445 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	HLA-B	Q31612	363 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	ALKBH5	Q6P6C2	394 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	GLRX5	Q86SX6	157 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	FAM124A	Q86V42	546 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	WDTC1	Q8N5D0	677 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	TC2N	Q8N9U0	490 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	DNASE2B	Q8WZ79	361 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	SNX19	Q92543	992 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	SELENOO	Q9BVL4	669 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	ZDHHC5	Q9C0B5	715 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	MKRN2	Q9H000	416 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	MRPL47	Q9HD33	250 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	BRD7	Q9NPI1	651 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	OLA1	Q9NTK5	396 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	OSER1	Q9NX31	292 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	IL37	Q9NZH6	218 aa		9.03	□□□□□ -0.96
USP4-213	ENST00000488520	EIF2B4	Q9UI10	523 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	FNDC3A	Q9Y2H6	1198 aa	Known RBP	9.03	□□□□□ -0.96
USP4-213	ENST00000488520	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	9.02	□□□□□ -0.97
USP4-213	ENST00000488520		A0A1B0GVT2	93 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520		A0A1W2PQH9	124 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	HHLA1	C9JL84	531 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520		E5RJQ4	531 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	GOLGA8S	H3BPF8	625 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	KCNK3	O14649	394 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	CER1	O95813	267 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	PRB1	P04280	392 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	GLI1	P08151	1106 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	HMBS	P08397	361 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	MYBL1	P10243	752 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	KRT3	P12035	628 aa		9.02	□□□□□ -0.97
USP4-213	ENST00000488520	UNG	P13051	313 aa	Predicted RBP	9.02	□□□□□ -0.97
USP4-213	ENST00000488520	RARG	P13631	454 aa		9.02	□□□□□ -0.97

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms