RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 C3orf70A6NLC5 250 aaPredicted RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 MPPED1O15442 326 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 KAT7O95251 611 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 PDE8BO95263 885 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 C1RP00736 705 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 MBPP02686 304 aaPredicted RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 HMOX1P09601 288 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 HSPA1AP0DMV8 641 aaKnown RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 HSPA1BP0DMV9 641 aaKnown RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 MATN1P21941 496 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CYP3A7P24462 503 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 ITPKBP27987 946 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 PRKAR2BP31323 418 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 FOLR3P41439 243 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 AGTR2P50052 363 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 GPC5P78333 572 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 LMAN2Q12907 356 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 MPP3Q13368 585 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CCNG2Q16589 344 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 MEA1Q16626 185 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 TBC1D25Q3MII6 688 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 PLAC9Q5JTB6 97 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 KIRREL2Q6UWL6 708 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CCDC129Q6ZRS4 1044 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 ZNF551Q7Z340 670 aaPredicted RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 DIS3L2Q8IYB7 885 aaKnown RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 C12orf76Q8N812 135 aaPredicted RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 ZMIZ2Q8NF64 920 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 NFKBIDQ8NI38 313 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CUL5Q93034 780 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 ELP4Q96EB1 424 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 RSRC1Q96IZ7 334 aaKnown RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 LENG8Q96PV6 779 aaPredicted RBP4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CD180Q99467 661 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 WDR11Q9BZH6 1224 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 DUSP22Q9NRW4 184 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 ABHD10Q9NUJ1 306 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 HAUS2Q9NVX0 235 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 MTMR4Q9NYA4 1195 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 DLL3Q9NYJ7 618 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 KLQ9UEF7 1012 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 FZD1Q9UP38 647 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 ROBO1Q9Y6N7 1651 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 IGSF1Q8N6C5 1336 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 MAPK8IP3Q9UPT6 1336 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CPDO75976 1380 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 LTN1O94822 1766 aa4.37□□□□□ -1.71
PTCD3-216ENST00000487043 CRYBG1Q9Y4K1 1723 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 NPIPB13A6NJU9 1138 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 FAM90A7PA6NKC0 464 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 NPIPB5A8MRT5 1133 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 FAM90A22PA8MWA6 464 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 FAM90A12PA8MX19 464 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 FAM90A23PA8MXZ1 464 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 NPIPB4C9JG80 1138 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 QSOX1O00391 747 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 SYN3O14994 580 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 SLC3A2P08195 630 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 EGR2P11161 476 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 UBL4AP11441 157 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 NDUFB7P17568 137 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 FPR3P25089 353 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 DUSP1P28562 367 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 AVPR2P30518 371 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 MAPK4P31152 587 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 TMPOP42166 694 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 STAT1P42224 750 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 COPB1P53618 953 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 RIPK4P57078 832 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 FOXE3Q13461 319 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 DCTN2Q13561 401 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 ALKBH1Q13686 389 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 PRICKLE4Q2TBC4 344 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 UBAP2Q5T6F2 1119 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 SNX30Q5VWJ9 437 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 KAZNQ674X7 775 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 KYAT3Q6YP21 454 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 WDR63Q8IWG1 891 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 CNTROBQ8N137 903 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 OR8H2Q8N162 312 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 VPS52Q8N1B4 723 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 ZNF366Q8N895 744 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 C1orf131Q8NDD1 294 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 SRFBP1Q8NEF9 429 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 ABHD11Q8NFV4 315 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 RFWD2Q8NHY2 731 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 ZCCHC10Q8TBK6 192 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 SNRNP27Q8WVK2 155 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 AKAP1Q92667 903 aaKnown RBP eCLIP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 PLEKHG4BQ96PX9 1271 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 NPAS1Q99742 590 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 HTATIP2Q9BUP3 242 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 HDHD5Q9BXW7 423 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 GHITMQ9H3K2 345 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 ZNF703Q9H7S9 590 aaPredicted RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 EIF2B3Q9NR50 452 aaKnown RBP4.36□□□□□ -1.71
PTCD3-216ENST00000487043 ZDHHC7Q9NXF8 308 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 TAS2R10Q9NYW0 307 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 C11orf21Q9P2W6 132 aa4.36□□□□□ -1.71
PTCD3-216ENST00000487043 CD207Q9UJ71 328 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms