RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SGSHP51688 502 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 GDF10P55107 478 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 NSUN2Q08J23 767 aaKnown RBP eCLIP10.37□□□□□ -0.75
USP39-215ENST00000481409 WASHC5Q12768 1159 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 RUNX3Q13761 415 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 PRPSAP1Q14558 356 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 EIF4HQ15056 248 aaKnown RBP10.37□□□□□ -0.75
USP39-215ENST00000481409 ELF2Q15723 593 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 SMAD2Q15796 467 aaKnown RBP10.37□□□□□ -0.75
USP39-215ENST00000481409 PLEKHG6Q3KR16 790 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 RNF219Q5W0B1 726 aaPredicted RBP10.37□□□□□ -0.75
USP39-215ENST00000481409 TANGO2Q6ICL3 276 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 CCNI2Q6ZMN8 369 aaPredicted RBP10.37□□□□□ -0.75
USP39-215ENST00000481409 PID1Q7Z2X4 250 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 ZNF354CQ86Y25 554 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 TMEM25Q86YD3 366 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 KLHDC8BQ8IXV7 354 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 PPIL6Q8IXY8 311 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 KDM1BQ8NB78 822 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 RIN3Q8TB24 985 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 SPOCK2Q92563 424 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 MSANTD3Q96H12 275 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 PKNOX2Q96KN3 472 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 LMLNQ96KR4 655 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 GUCD1Q96NT3 240 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 FAM118BQ9BPY3 351 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 PARD6BQ9BYG5 372 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 GBA3Q9H227 469 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 LINC00597Q9H2U6 94 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 ECT2Q9H8V3 914 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 VPS45Q9NRW7 570 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 KLHL8Q9P2G9 620 aaPredicted RBP10.37□□□□□ -0.75
USP39-215ENST00000481409 UBA2Q9UBT2 640 aaPredicted RBP10.37□□□□□ -0.75
USP39-215ENST00000481409 SEPT3Q9UH03 358 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 VPS28Q9UK41 221 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 AAR2Q9Y312 384 aaKnown RBP10.37□□□□□ -0.75
USP39-215ENST00000481409 WNT6Q9Y6F9 365 aa10.37□□□□□ -0.75
USP39-215ENST00000481409 NYNRINQ9P2P1 1898 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 TRDMT1O14717 391 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 PPFIA2O75334 1257 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 PEX11BO96011 259 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 PABPC1P11940 636 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 GLULP15104 373 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 TPSB2P20231 275 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 KCNA5P22460 613 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 IVDP26440 423 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 MMP13P45452 471 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 MAPK8P45983 427 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 RPL21P46778 160 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 SLC7A5Q01650 507 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 GPS1Q13098 491 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 SEMA5AQ13591 1074 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 HTR4Q13639 388 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 LBRQ14739 615 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 SKIV2LQ15477 1246 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 TPSAB1Q15661 275 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 ALG1LQ6GMV1 187 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 HIBCHQ6NVY1 386 aaPredicted RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 EMBQ6PCB8 327 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 CIR1Q86X95 450 aaPredicted RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 ETFBKMTQ8IXQ9 262 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 PLPP6Q8IY26 295 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 ZNF567Q8N184 647 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 MCUQ8NE86 351 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 TTC16Q8NEE8 873 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 DNASE1L2Q92874 299 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 ART4Q93070 314 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 ISG20Q96AZ6 181 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 RSPRY1Q96DX4 576 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 ALG14Q96F25 216 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 LRRC3BQ96PB8 259 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 PSKH2Q96QS6 385 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 FCRL5Q96RD9 977 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 TRIM51Q9BSJ1 452 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 CEP44Q9C0F1 390 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 POLR1EQ9GZS1 481 aaKnown RBP10.36□□□□□ -0.75
USP39-215ENST00000481409 ABCB8Q9NUT2 735 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 GGA2Q9UJY4 613 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 SLC8A2Q9UPR5 921 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 ATP8A1Q9Y2Q0 1164 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 LAMA3Q16787 3333 aa10.36□□□□□ -0.75
USP39-215ENST00000481409 A0A0D9SEW6 157 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 GRXCR2A6NFK2 248 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 H3BQ06 376 aaPredicted RBP10.35□□□□□ -0.75
USP39-215ENST00000481409 KCNK1O00180 336 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 NPC1O15118 1278 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 EIF3HO15372 352 aaKnown RBP eCLIP10.35□□□□□ -0.75
USP39-215ENST00000481409 ZMPSTE24O75844 475 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 MAP3K6O95382 1288 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 JCHAINP01591 159 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 ATP5BP06576 529 aaKnown RBP10.35□□□□□ -0.75
USP39-215ENST00000481409 SRPRAP08240 638 aaKnown RBP10.35□□□□□ -0.75
USP39-215ENST00000481409 MLNP12872 115 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 ACVRL1P37023 503 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 NNMTP40261 264 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 CSKP41240 450 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 CSNK1DP48730 415 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 DGKGP49619 791 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 GEMP55040 296 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 PFKPQ01813 784 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms