RNA–Protein interactions for RNA: ENST00000472756.1

VPS45-206, Transcript of vacuolar protein sorting 45 homolog, human

TSL 2

Gene VPS45, Length 352 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-206	ENST00000472756	HSDL1	Q3SXM5	330 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	CCDC40	Q4G0X9	1142 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	XKR3	Q5GH77	459 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	ZNF569	Q5MCW4	686 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	DNTTIP2	Q5QJE6	756 aa	Known RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	PRAMEF14	Q5SWL7	426 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	ODR4	Q5SWX8	454 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	BROX	Q5VW32	411 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	SDE2	Q6IQ49	451 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	VWA1	Q6PCB0	445 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	CYP26C1	Q6V0L0	522 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	ZNF66	Q6ZN08	573 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	C15orf39	Q6ZRI6	1047 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	USP43	Q70EL4	1123 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	RRAGA	Q7L523	313 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TRAPPC11	Q7Z392	1133 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PEG10	Q86TG7	708 aa	Known RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	RASSF3	Q86WH2	238 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PALB2	Q86YC2	1186 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	CBWD2	Q8IUF1	395 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	CNGA4	Q8IV77	575 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	FAM114A1	Q8IWE2	563 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	FBXO16	Q8IX29	292 aa	Predicted RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	LINC01465	Q8N7H1	131 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	RBMXL3	Q8N7X1	1067 aa	Known RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	RDM1	Q8NG50	284 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	ZNF480	Q8WV37	535 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TRAPPC12	Q8WVT3	735 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	CCDC47	Q96A33	483 aa	Known RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	TMEM143	Q96AN5	459 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	RAX2	Q96IS3	184 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PCDHB18P	Q96TA0	734 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TSG101	Q99816	390 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TMEM79	Q9BSE2	394 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	NUP58	Q9BVL2	599 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	CARD6	Q9BX69	1037 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	GTPBP4	Q9BZE4	634 aa	Known RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	EDEM3	Q9BZQ6	932 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TMEM117	Q9H0C3	514 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	POLR3F	Q9H1D9	316 aa	Predicted RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	CXCL16	Q9H2A7	254 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	RNPEP	Q9H4A4	650 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	DHX33	Q9H6R0	707 aa	Known RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	CAAP1	Q9H8G2	361 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	ACP6	Q9NPH0	428 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	NMRK2	Q9NPI5	230 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	LZTFL1	Q9NQ48	299 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PLCB1	Q9NQ66	1216 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	ZNF446	Q9NWS9	450 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TAS2R14	Q9NYV8	317 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	SMARCAL1	Q9NZC9	954 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	AIPL1	Q9NZN9	384 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	KCND2	Q9NZV8	630 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	MORF4L1	Q9UBU8	362 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	SEL1L	Q9UBV2	794 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	SLC9A2	Q9UBY0	812 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	ARMCX3	Q9UH62	379 aa	Predicted RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	DNAJC12	Q9UKB3	198 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PNMA2	Q9UL42	364 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TBX20	Q9UMR3	447 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	TBC1D30	Q9Y2I9	924 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	NOC2L	Q9Y3T9	749 aa	Known RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	PCDHA13	Q9Y5I0	950 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PCDHA10	Q9Y5I2	948 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	MRFAP1	Q9Y605	127 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	STYXL1	Q9Y6J8	313 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	UBE4B	O95155	1302 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PTPRJ	Q12913	1337 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	PHLPP2	Q6ZVD8	1323 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	LOC285556	D6RIA3	1793 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	COL11A1	P12107	1806 aa	Predicted RBP	2.58	□□□□□ -2
VPS45-206	ENST00000472756	PTPRF	P10586	1907 aa		2.58	□□□□□ -2
VPS45-206	ENST00000472756	CCL15-CCL14	A0A0B4J2E2	113 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	FAM170A	A1A519	330 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	DENND3	A2RUS2	1198 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	GTPBP10	A4D1E9	387 aa	Known RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	LCHN	A4D1U4	455 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	CXorf49	A8MYA2	514 aa	Predicted RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756		K7ENM7	598 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	PDHX	O00330	501 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	FOXN3	O00409	490 aa	Predicted RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	PES1	O00541	588 aa	Known RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	MAPK13	O15264	365 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	PMM2	O15305	246 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	ZSCAN12	O43309	604 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	NCK2	O43639	380 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	BUB1	O43683	1085 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	KRT86	O43790	486 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	TBCA	O75347	108 aa	Known RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	STAM2	O75886	525 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	URI1	O94763	535 aa	Predicted RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	GFPT2	O94808	682 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	CELF2	O95319	508 aa	Known RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	SLU7	O95391	586 aa	Known RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	VNN1	O95497	513 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	FGFR1OP	O95684	399 aa	Known RBP	2.57	□□□□□ -2
VPS45-206	ENST00000472756	SLC25A27	O95847	323 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	GPANK1	O95872	356 aa		2.57	□□□□□ -2
VPS45-206	ENST00000472756	PIGR	P01833	764 aa		2.57	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms