RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 DFFAO00273 331 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 AXIN1O15169 862 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 SIN3BO75182 1162 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 ZRANB2O95218 330 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 CD160O95971 181 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 GABRG2P18507 467 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 CTNNA2P26232 953 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 CTNNA1P35221 906 aaKnown RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 FNTBP49356 437 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 SERPINH1P50454 418 aaKnown RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 PAPOLAP51003 745 aaKnown RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 GEMIN4P57678 1058 aaKnown RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 PAFAH1B3Q15102 231 aaKnown RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 C9orf64Q5T6V5 341 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 MFSD7Q6UXD7 560 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 PEX26Q7Z412 305 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 WDR5BQ86VZ2 330 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 LONP2Q86WA8 852 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 TMPRSS6Q8IU80 811 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 TP53INP2Q8IXH6 220 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 KATNAL2Q8IYT4 538 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 RCOR2Q8IZ40 523 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 PQLC3Q8N755 202 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 NETO2Q8NC67 525 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 ZBTB44Q8NCP5 570 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 MDGA1Q8NFP4 955 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 OR2T3Q8NH03 318 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 HMGB4Q8WW32 186 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 KRT35Q92764 455 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 PTPRN2Q92932 1015 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 MRGPRX1Q96LB2 322 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 MAK16Q9BXY0 300 aaKnown RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 MKRN2Q9H000 416 aaKnown RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 FBRSQ9HAH7 460 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 LZTFL1Q9NQ48 299 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 BCCIPQ9P287 314 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 PCDHA3Q9Y5H8 950 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 ACTL7AQ9Y615 435 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 CAPN6Q9Y6Q1 641 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 CACNA1IQ9P0X4 2223 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 KMT2EQ8IZD2 1858 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 CCDC66A2RUB6 948 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 SMAD6O43541 496 aaKnown RBP12.19□□□□□ -0.46
VPS13D-204ENST00000469054 FTCDO95954 541 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 VAV1P15498 845 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 NDUFV2P19404 249 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 MARCKSL1P49006 195 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 COPAP53621 1224 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 TAZQ16635 292 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 NCBP2-AS2Q69YL0 99 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 METTL3Q86U44 580 aaKnown RBP12.19□□□□□ -0.46
VPS13D-204ENST00000469054 PGBD3Q8N328 593 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 EXD1Q8NHP7 514 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.19□□□□□ -0.46
VPS13D-204ENST00000469054 UBE2Q2Q8WVN8 375 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 CEP44Q9C0F1 390 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 PRDM16Q9HAZ2 1276 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 IPO11Q9UI26 975 aaKnown RBP12.19□□□□□ -0.46
VPS13D-204ENST00000469054 PCDHGA2Q9Y5H1 932 aa12.19□□□□□ -0.46
VPS13D-204ENST00000469054 ATG2BQ96BY7 2078 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 J3KR12 359 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 PRAMEF11O60813 436 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 ZNF821O75541 412 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 C7P10643 843 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 ZFXP17010 805 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 CDKN2BP42772 138 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 PEX5P50542 639 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 RWDD2BP57060 319 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 ELAVL3Q14576 367 aaKnown RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 INO80DQ53TQ3 878 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 SLC9A4Q6AI14 798 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 LEKR1Q6ZMV7 388 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 SPOCD1Q6ZMY3 1216 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 ARHGAP36Q6ZRI8 547 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 Q6ZVU0 165 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 RFX6Q8HWS3 928 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 LRRC49Q8IUZ0 686 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 STK40Q8N2I9 435 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 PCDH20Q8N6Y1 951 aaKnown RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 CASKIN2Q8WXE0 1202 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 PRCCQ92733 491 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 ATOH1Q92858 354 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 ISG20Q96AZ6 181 aaKnown RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 SIPA1Q96FS4 1042 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 RBM41Q96IZ5 413 aaKnown RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 FAM129BQ96TA1 746 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 TPSD1Q9BZJ3 242 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 SLC6A17Q9H1V8 727 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 PDFQ9HBH1 243 aa12.18□□□□□ -0.46
VPS13D-204ENST00000469054 UBA2Q9UBT2 640 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 FCF1Q9Y324 198 aaKnown RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 ARIH1Q9Y4X5 557 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-204ENST00000469054 MYO18AQ92614 2054 aaKnown RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 MIF4GDA9UHW6 222 aaKnown RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 APOL1O14791 398 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 MCF2LO15068 1137 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 ZSCAN12O43309 604 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 MFSD11O43934 449 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 BNIP3LO60238 219 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 LILRB5O75023 590 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms