RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 LGI2Q8N0V4 545 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 ATPAF2Q8N5M1 289 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 ARL10Q8N8L6 244 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 ATP11CQ8NB49 1132 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 IGSF8Q969P0 613 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 SLC22A12Q96S37 553 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 RBM15Q96T37 977 aaKnown RBP eCLIP8.26□□□□□ -1.09
CCDC39-201ENST00000442201 GDF15Q99988 308 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 PBX4Q9BYU1 374 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 PABPC3Q9H361 631 aaKnown RBP8.26□□□□□ -1.09
CCDC39-201ENST00000442201 CERS4Q9HA82 394 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 DNAJC17Q9NVM6 304 aaKnown RBP8.26□□□□□ -1.09
CCDC39-201ENST00000442201 NOP53Q9NZM5 478 aaKnown RBP8.26□□□□□ -1.09
CCDC39-201ENST00000442201 ITGB1BP2Q9UKP3 347 aa8.26□□□□□ -1.09
CCDC39-201ENST00000442201 A0A1W2PRU2 124 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CHADO15335 359 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CNTN5O94779 1100 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 FGF19O95750 216 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 KLKB1P03952 638 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 HNRNPA1P09651 372 aaKnown RBP eCLIP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PTPN2P17706 415 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 NDST2P52849 883 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 WASHC5Q12768 1159 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 UAP1Q16222 522 aaPredicted RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ALFQ53S48 1182 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ANKRD22Q5VYY1 191 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 TRMT10CQ7L0Y3 403 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CACTIN-AS1Q8N1I8 211 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 UMODL1-AS1Q8N2C9 162 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ZBTB8BQ8NAP8 495 aaPredicted RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 DEPDC1BQ8WUY9 529 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PWWP2AQ96N64 755 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 TSGA13Q96PP4 275 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 VAT1Q99536 393 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 DDX50Q9BQ39 737 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 SLC39A8Q9C0K1 460 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 SEMA4AQ9H3S1 761 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 NDFIP2Q9NV92 336 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 KLHL8Q9P2G9 620 aaPredicted RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CPQQ9Y646 472 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 TRAV19A0A0A6YYK7 116 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 DPPA5A6NC42 116 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 E7EVH7 732 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 GOLGA8MH3BSY2 632 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PER2O15055 1255 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 XYLBO75191 536 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 METTL18O95568 372 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 FAM107AO95990 144 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CCNCP24863 283 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 SCTRP47872 440 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ARL4CP56559 192 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 HIF1AQ16665 826 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CCDC92Q53HC0 331 aaPredicted RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 FAM133BQ5BKY9 247 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 RABGAP1LQ5R372 815 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 FAM182AQ5T1J6 154 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ADGRF1Q5T601 910 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 FAXCQ5TGI0 409 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PPP2R2DQ66LE6 453 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 DENND2CQ68D51 928 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PPP1R21Q6ZMI0 780 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 KDM7AQ6ZMT4 941 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CENPUQ71F23 418 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PID1Q7Z2X4 250 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ZFRQ96KR1 1074 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ZIM3Q96PE6 472 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 TRAPPC9Q96Q05 1148 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 NKX2-4Q9H2Z4 354 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 SLC28A3Q9HAS3 691 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ETNK1Q9HBU6 452 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 GALNT8Q9NY28 637 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 AGO1Q9UL18 857 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PLAAQ9Y263 795 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PLXNA4Q9HCM2 1894 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 GREB1Q4ZG55 1949 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 LAMA2P24043 3122 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ZNF638Q14966 1978 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 TMEM63AO94886 807 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 LATS1O95835 1130 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 APRTP07741 180 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PFKLP17858 780 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 LSP1P33241 339 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 FDFT1P37268 417 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 MAPKAPK2P49137 400 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 EPHA5P54756 1037 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 KCNJ11Q14654 390 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 C5orf22Q49AR2 442 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 AFMIDQ63HM1 303 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 RFWD3Q6PCD5 774 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 RBM23Q86U06 439 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 RELL1Q8IUW5 271 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PDIK1LQ8N165 341 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ZNF567Q8N184 647 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 LEMD2Q8NC56 503 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ARNTL2Q8WYA1 636 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 PPP2R3CQ969Q6 453 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CEP41Q9BYV8 373 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 FRMD8Q9BZ67 464 aaPredicted RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 LMAN2LQ9H0V9 348 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 CDC42EP4Q9H3Q1 356 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms