RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 E9PCH4 1651 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 FRMPD2Q68DX3 1309 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 NCK2O43639 380 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 CABYRO75952 493 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 GLP2RO95838 553 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 CLCN5P51795 746 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 NFIL3Q16649 462 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 DGKDQ16760 1214 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS53-204ENST00000437048 MCOLN3Q8TDD5 553 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 TULP4Q9NRJ4 1543 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SYNJ2BP-COX16A0A087WUM0 186 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 C19orf81C9J6K1 198 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 H6PDO95479 791 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 LSM12Q3MHD2 195 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 SLC25A25Q6KCM7 469 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 RINLQ6ZS11 566 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 NIPA1Q7RTP0 329 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 TMEM17Q86X19 198 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 UNC5CLQ8IV45 518 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 DNAJC11Q9NVH1 559 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 COX16Q9P0S2 106 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 MORF4L1Q9UBU8 362 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 MYH1P12882 1939 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 MYH2Q9UKX2 1941 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 MYH4Q9Y623 1939 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PPP1R3GB7ZBB8 358 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SULT1B1O43704 296 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 RNASEH1O60930 286 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 CTPS1P17812 591 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ATP5F1P24539 256 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 ELAVL2Q12926 359 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 ACCSLQ4AC99 568 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZDHHC20Q5W0Z9 365 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 CRTC3Q6UUV7 619 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SNX32Q86XE0 403 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZBTB8BQ8NAP8 495 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 UCMAQ8WVF2 138 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 CENPNQ96H22 339 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 GRIP2Q9C0E4 1043 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SIK2Q9H0K1 926 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 KCTD5Q9NXV2 234 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ARID1BQ8NFD5 2236 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 COL15A1P39059 1388 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZNF829Q3KNS6 432 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 RBM48Q5RL73 367 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 TTI2Q6NXR4 508 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 MPP5Q8N3R9 675 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 INO80EQ8NBZ0 244 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 MARCOQ9UEW3 520 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 IPO13O94829 963 aaKnown RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 S100A2P29034 98 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 GNA12Q03113 381 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PKN1Q16512 942 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PLEKHG4Q58EX7 1191 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 RABL3Q5HYI8 236 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 LENG9Q96B70 501 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 BIRC8Q96P09 236 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 DNAJC16Q9Y2G8 782 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PTPN3P26045 913 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 GABRB2P47870 512 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 BTKQ06187 659 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 WDR72Q3MJ13 1102 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 KLHL22Q53GT1 634 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ZNF572Q7Z3I7 529 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 C1QTNF7Q9BXJ2 289 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PCDHGB2Q9Y5G2 931 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 GRIN2DO15399 1336 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 EML1O00423 815 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 SLC30A4O14863 429 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ABL1P00519 1130 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 GSTT2P0CG29 244 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PLEKHN1Q494U1 663 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 STXBP5Q5T5C0 1151 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 THAP5Q7Z6K1 395 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 TAF8Q7Z7C8 310 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 FBXO39Q8N4B4 442 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 CIDECQ96AQ7 238 aaPredicted RBP7.28□□□□□ -1.24
VPS53-204ENST00000437048 GPRASP2Q96D09 838 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 PLEKHG4BQ96PX9 1271 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 MTMR10Q9NXD2 777 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 GGT7Q9UJ14 662 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 ABCG2Q9UNQ0 655 aa7.28□□□□□ -1.24
VPS53-204ENST00000437048 POU1F1P28069 291 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 NOS3P29474 1203 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 NAMPTP43490 491 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 UBE3AQ05086 875 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 USP43Q70EL4 1123 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 PGAM4Q8N0Y7 254 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 ZFP57Q9NU63 452 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 LGALS13Q9UHV8 139 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 DYRK1BQ9Y463 629 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 TLL2Q9Y6L7 1015 aa7.27□□□□□ -1.24
VPS53-204ENST00000437048 NCANO14594 1321 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 HMGCRP04035 888 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 CAMK2GQ13555 558 aaPredicted RBP7.27□□□□□ -1.25
VPS53-204ENST00000437048 MYBPC3Q14896 1274 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 LINC00299Q6ZSB3 139 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 TMEM192Q8IY95 271 aa7.27□□□□□ -1.25
VPS53-204ENST00000437048 STUB1Q9UNE7 303 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms