RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 FAM96AQ9H5X1 160 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 TBC1D14Q9P2M4 693 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 ARFGEF1Q9Y6D6 1849 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 PRORSD1PA6NEY8 169 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 NDUFB10O96000 172 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 TSHRP16473 764 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 POLR2IP36954 125 aaKnown RBP7.58□□□□□ -1.2
CPSF6-202ENST00000435070 IFITM3Q01628 133 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 TNK2Q07912 1038 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 MAGEE2Q8TD90 523 aaPredicted RBP7.58□□□□□ -1.2
CPSF6-202ENST00000435070 ZBTB45Q96K62 511 aaPredicted RBP7.58□□□□□ -1.2
CPSF6-202ENST00000435070 EBNA1BP2Q99848 306 aaKnown RBP7.58□□□□□ -1.2
CPSF6-202ENST00000435070 TRIM8Q9BZR9 551 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 KLHL3Q9UH77 587 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 PCDHGC3Q9UN70 934 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 CLDN25C9JDP6 229 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 AGRPO00253 132 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 CALB1P05937 261 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 GARTP22102 1010 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 SEPHS1P49903 392 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 SERPINB9P50453 376 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 NME5P56597 212 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 IRF9Q00978 393 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 MERTKQ12866 999 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 FAM98CQ17RN3 349 aaKnown RBP7.58□□□□□ -1.2
CPSF6-202ENST00000435070 TBCELQ5QJ74 424 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 IQSEC1Q6DN90 963 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 SLC22A16Q86VW1 577 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 DEPDC4Q8N2C3 294 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 GPD1LQ8N335 351 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 ZCCHC7Q8N3Z6 543 aaKnown RBP7.58□□□□□ -1.2
CPSF6-202ENST00000435070 SGF29Q96ES7 293 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 NANOGQ9H9S0 305 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 CNGB3Q9NQW8 809 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 LAMB2P55268 1798 aa7.58□□□□□ -1.2
CPSF6-202ENST00000435070 ZNFX1Q9P2E3 1918 aaKnown RBP7.58□□□□□ -1.2
CPSF6-202ENST00000435070 UNCXA6NJT0 531 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 C9IYK1 514 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TRDMT1O14717 391 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 SNAP91O60641 907 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 XYLBO75191 536 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 GLDCP23378 1020 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 RHDQ02161 417 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 LRP8Q14114 963 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 MAPRE1Q15691 268 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 DGKDQ16760 1214 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 OTUD3Q5T2D3 398 aaPredicted RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 SCYL1Q96KG9 808 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 PAK5Q9P286 719 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 PCDHB12Q9Y5F1 795 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 C9JVG2 144 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 PHGDHO43175 533 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 MFN2O95140 757 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 MYCP01106 439 aaPredicted RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 ENDOUP21128 410 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 ELK4P28324 431 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 YWHABP31946 246 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 CLK3P49761 638 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 HSPA2P54652 639 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 NLRP11P59045 1033 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 COPZ1P61923 177 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 DMP1Q13316 513 aaPredicted RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 UGCGQ16739 394 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 SLC10A5Q5PT55 438 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 OR5B17Q8NGF7 314 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 BSNDQ8WZ55 320 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 SIGLEC10Q96LC7 697 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 DCDC2Q9UHG0 476 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 DCKP27707 260 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 BCAR1P56945 870 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TSTA3Q13630 321 aaPredicted RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 AGKQ53H12 422 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 ARL13AQ5H913 290 aaPredicted RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 RFPL4BQ6ZWI9 263 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 C12orf56Q8IXR9 622 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TMEM161BQ8NDZ6 487 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 OLFM1Q99784 485 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 CCDC90BQ9GZT6 254 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TRPV5Q9NQA5 729 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 SEPT3Q9UH03 358 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 FAM159BA6NKW6 160 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 CHADO15335 359 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 DDHD2O94830 711 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TFEBP19484 476 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 ATP2B4P23634 1241 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 SERPINB1P30740 379 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 HARS2P49590 506 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 IFITM2Q01629 132 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 CREB5Q02930 508 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 SLC25A11Q02978 314 aaKnown RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 E2F2Q14209 437 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TMEM126BQ8IUX1 230 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TNIP2Q8NFZ5 429 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 ZFP90Q8TF47 636 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 ABCB10Q9NRK6 738 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 OAZ3Q9UMX2 235 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 TRPM3Q9HCF6 1732 aaPredicted RBP7.57□□□□□ -1.2
CPSF6-202ENST00000435070 LAMB1P07942 1786 aa7.57□□□□□ -1.2
CPSF6-202ENST00000435070 HEATR9A2RTY3 570 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms