RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ACVRL1P37023 503 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 LMAN1P49257 510 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 DR1Q01658 176 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 LRRC32Q14392 662 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 LBRQ14739 615 aaKnown RBP10.3□□□□□ -0.76
CD44-207ENST00000425428 MLF2Q15773 248 aaPredicted RBP10.3□□□□□ -0.76
CD44-207ENST00000425428 CYP1B1Q16678 543 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 P3H1Q32P28 736 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 FNDC3BQ53EP0 1204 aaKnown RBP10.3□□□□□ -0.76
CD44-207ENST00000425428 FSCBQ5H9T9 825 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 RNF43Q68DV7 783 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 C8orf74Q6P047 294 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 TPRG1Q6ZUI0 275 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 PID1Q7Z2X4 250 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 RNF135Q8IUD6 432 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 ETFBKMTQ8IXQ9 262 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 KCNV2Q8TDN2 545 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 ATG4AQ8WYN0 398 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 FATE1Q969F0 183 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 OLFM3Q96PB7 478 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 KRT12Q99456 494 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 LGMNQ99538 433 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 ACE2Q9BYF1 805 aaPredicted RBP10.3□□□□□ -0.76
CD44-207ENST00000425428 RAB17Q9H0T7 212 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 MFSD1Q9H3U5 465 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 ELOVL2Q9NXB9 296 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 SUN2Q9UH99 717 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 MFHAS1Q9Y4C4 1052 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 KIAA1549LQ6ZVL6 1849 aa10.3□□□□□ -0.76
CD44-207ENST00000425428 TCRBV7S2A1N4TA0A589 114 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 C19orf67A6NJJ6 358 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 ARNTLO00327 626 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 MAFKO60675 156 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 SLU7O95391 586 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 RBL1P28749 1068 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 MMP13P45452 471 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 MAPK8P45983 427 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 SLC6A11P48066 632 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 GALK1P51570 392 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 RHOAP61586 193 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 SNRPD1P62314 119 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 ADCY2Q08462 1091 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 SLC10A2Q12908 348 aaPredicted RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 PRKD1Q15139 912 aaPredicted RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 GLE1Q53GS7 698 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 ZNF572Q7Z3I7 529 aaPredicted RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 ARHGAP12Q8IWW6 846 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 RYBPQ8N488 228 aaPredicted RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 CCDC33Q8N5R6 958 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 PRELID2Q8N945 189 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 SLC35B2Q8TB61 432 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 P2RY11Q96G91 374 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 FAM118BQ9BPY3 351 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 TMEM121Q9BTD3 319 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 CARD6Q9BX69 1037 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 KLC2Q9H0B6 622 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 DDX47Q9H0S4 455 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 ARHGEF3Q9NR81 526 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 RBM22Q9NW64 420 aaKnown RBP eCLIP10.29□□□□□ -0.76
CD44-207ENST00000425428 SMARCAL1Q9NZC9 954 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 PAK5Q9P286 719 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 ZNF212Q9UDV6 495 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 VPS51Q9UID3 782 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 NYNRINQ9P2P1 1898 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 FAM187AA6NFU0 413 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 RNF103O00237 685 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 PSMD3O43242 534 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 NARSO43776 548 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 OPHN1O60890 802 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 IGSF6O95976 241 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 JCHAINP01591 159 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 CISD3P0C7P0 127 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 NFKBIAP25963 317 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 OPRD1P41143 372 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 SERPINH1P50454 418 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 SARNPP82979 210 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 C2orf54Q08AI8 447 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 GRM3Q14832 879 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 STARD3Q14849 445 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 PON2Q15165 354 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 DGKKQ5KSL6 1271 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 CFAP58Q5T655 872 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 SERPINA13PQ6UXR4 307 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 PCGF5Q86SE9 256 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 DSG4Q86SJ6 1040 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.29□□□□□ -0.76
CD44-207ENST00000425428 APCDD1Q8J025 514 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 FAM71DQ8N9W8 422 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 KDM1BQ8NB78 822 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 BBOF1Q8ND07 529 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 WFDC5Q8TCV5 224 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 TTC17Q96AE7 1141 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 CEP44Q9C0F1 390 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 POLR1EQ9GZS1 481 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 RBM12Q9NTZ6 932 aaKnown RBP10.29□□□□□ -0.76
CD44-207ENST00000425428 ASIC3Q9UHC3 531 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 PCYOX1Q9UHG3 505 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 CA14Q9ULX7 337 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 ERVW-1Q9UQF0 538 aa10.29□□□□□ -0.76
CD44-207ENST00000425428 R3HDM2Q9Y2K5 976 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms