RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ZNF599Q96NL3 588 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 MYADMQ96S97 322 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 FOXP3Q9BZS1 431 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 GBA3Q9H227 469 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 POMKQ9H5K3 350 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 RBM22Q9NW64 420 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 MYOFQ9NZM1 2061 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 A0A0D9SEW6 157 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 F5H423 210 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 J3KR12 359 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 KDELR3O43731 214 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 PSMB4P28070 264 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 CSKP41240 450 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 MMP13P45452 471 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 SLC12A1Q13621 1099 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 PDGFRLQ15198 375 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 LY6G5CQ5SRR4 150 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 FYB2Q5VWT5 728 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 ZDHHC24Q6UX98 284 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 MTSS1LQ765P7 747 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 OTOP3Q7RTS5 596 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 TMEM25Q86YD3 366 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 SMRP1Q8NCR6 262 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 FIBINQ8TAL6 211 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 AENQ8WTP8 325 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 CPT1BQ92523 772 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 MAML1Q92585 1016 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 TEKT5Q96M29 485 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 XPO6Q96QU8 1125 aaKnown RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 C2orf49Q9BVC5 232 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 CINPQ9BW66 212 aaPredicted RBP17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 NEUROG2Q9H2A3 272 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 LINC00597Q9H2U6 94 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 ETNK1Q9HBU6 452 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 ZDHHC18Q9NUE0 388 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 IGSF9Q9P2J2 1179 aa17.47■□□□□ 0.39
CCDC28B-202ENST00000421922 ZBTB24O43167 697 aaPredicted RBP17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 APRTP07741 180 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 ADH5P11766 374 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 TYRP14679 529 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 NFKB1P19838 968 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 LTBRP36941 435 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 NUMBP49757 651 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 GEMIN4P57678 1058 aaKnown RBP17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 GAD2Q05329 585 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 RFTN1Q14699 578 aaPredicted RBP17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 LBRQ14739 615 aaKnown RBP17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 COL19A1Q14993 1142 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 SLMAPQ14BN4 828 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 POTEHQ6S545 545 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 DCAF4L2Q8NA75 395 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 RSPRY1Q96DX4 576 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 IL12RB2Q99665 862 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 NT5MQ9NPB1 228 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 MARK1Q9P0L2 795 aa17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 USP15Q9Y4E8 981 aaPredicted RBP17.46■□□□□ 0.39
CCDC28B-202ENST00000421922 H3BQ06 376 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 PSMD3O43242 534 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 METTL18O95568 372 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 PENKP01210 267 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 LAMP2P13473 410 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 FOSL2P15408 326 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 MZF1P28698 734 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 ECHS1P30084 290 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 ARL4CP56559 192 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 LMAN2Q12907 356 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 NR1H3Q13133 447 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 SEMA5AQ13591 1074 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 DHCR24Q15392 516 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 CCDC85BQ15834 202 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 EML3Q32P44 896 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 FSCBQ5H9T9 825 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 TANGO2Q6ICL3 276 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 RETSATQ6NUM9 610 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 ADGRG2Q8IZP9 1017 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 CPA6Q8N4T0 437 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 ZCCHC9Q8N567 271 aaKnown RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 OR52K2Q8NGK3 314 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 WFDC5Q8TCV5 224 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 MYLIPQ8WY64 445 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 PRCCQ92733 491 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 CAVIN3Q969G5 261 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 ELSPBP1Q96BH3 223 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 FEM1AQ9BSK4 669 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 ACE2Q9BYF1 805 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 SLC2A11Q9BYW1 496 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 FRMD8Q9BZ67 464 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 GLOD4Q9HC38 313 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 SEPT3Q9UH03 358 aa17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 FARP1Q9Y4F1 1045 aaPredicted RBP17.45■□□□□ 0.38
CCDC28B-202ENST00000421922 CDH23Q9H251 3354 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 GOLGA8MH3BSY2 632 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 ANXA9O76027 345 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 CYP17A1P05093 508 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 HLA-DQB2P05538 268 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 TPSB2P20231 275 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 KCNA5P22460 613 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 FCARP24071 287 aa17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 DHX9Q08211 1270 aaKnown RBP17.44■□□□□ 0.38
CCDC28B-202ENST00000421922 KCNJ11Q14654 390 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms